miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2895 3' -50 NC_001493.1 + 133619 0.66 0.996886
Target:  5'- ---cGGUCGGgGGCCUGggugccGCCGUGAa- -3'
miRNA:   3'- aguuCUAGCUgUUGGAC------UGGCACUgg -5'
2895 3' -50 NC_001493.1 + 133401 0.66 0.99527
Target:  5'- -uGAGGUCGGCGAggaUGgucgcgcaaauguccACCGUGGCCc -3'
miRNA:   3'- agUUCUAGCUGUUgg-AC---------------UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 131631 0.66 0.995693
Target:  5'- aCGAGGUCGAUGGguuuuuccgcCCUGuCCGcGAUCa -3'
miRNA:   3'- aGUUCUAGCUGUU----------GGACuGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 131582 0.68 0.983099
Target:  5'- cCGAGAUgGGCGuCCaUGACUGgagcGACCu -3'
miRNA:   3'- aGUUCUAgCUGUuGG-ACUGGCa---CUGG- -5'
2895 3' -50 NC_001493.1 + 129172 0.68 0.983099
Target:  5'- aUCGcgcGGAUCGuCGgaagaugcgugcACCUGcgcGCCGUGACUa -3'
miRNA:   3'- -AGU---UCUAGCuGU------------UGGAC---UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 128144 0.66 0.996886
Target:  5'- cCAGGAgaugguaucgUGGCGACUccgaucGGCCGUGAUCg -3'
miRNA:   3'- aGUUCUa---------GCUGUUGGa-----CUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 127589 0.69 0.978746
Target:  5'- gCGAGAgaGACcACCUGugUGUGugUg -3'
miRNA:   3'- aGUUCUagCUGuUGGACugGCACugG- -5'
2895 3' -50 NC_001493.1 + 126720 0.71 0.944126
Target:  5'- cCGAGGcgGACGAUCUGACCa-GACCa -3'
miRNA:   3'- aGUUCUagCUGUUGGACUGGcaCUGG- -5'
2895 3' -50 NC_001493.1 + 126422 0.66 0.99497
Target:  5'- -----uUCGGCGAUCggUGACCGcGGCCg -3'
miRNA:   3'- aguucuAGCUGUUGG--ACUGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 125204 0.69 0.978746
Target:  5'- ---uGAUCGGCGcgcuCCUGACCcuacugaUGACCa -3'
miRNA:   3'- aguuCUAGCUGUu---GGACUGGc------ACUGG- -5'
2895 3' -50 NC_001493.1 + 121082 0.69 0.976282
Target:  5'- gCGGGAggagCGA--GCCgcgGACCGgUGACCa -3'
miRNA:   3'- aGUUCUa---GCUguUGGa--CUGGC-ACUGG- -5'
2895 3' -50 NC_001493.1 + 118822 0.66 0.996329
Target:  5'- aCGAGAagGAUgaggAACCgggcaccGGCCGUGACg -3'
miRNA:   3'- aGUUCUagCUG----UUGGa------CUGGCACUGg -5'
2895 3' -50 NC_001493.1 + 117498 0.67 0.992194
Target:  5'- cCAAGGUCGAuCGACgUGGCaaaGcUGACg -3'
miRNA:   3'- aGUUCUAGCU-GUUGgACUGg--C-ACUGg -5'
2895 3' -50 NC_001493.1 + 117484 0.66 0.995693
Target:  5'- uUCAAGAUgGACGGggUCaUGACCG-GGCg -3'
miRNA:   3'- -AGUUCUAgCUGUU--GG-ACUGGCaCUGg -5'
2895 3' -50 NC_001493.1 + 112543 0.7 0.964317
Target:  5'- aUCGGGuGUCGACAuUCUuACCGUGAaCCu -3'
miRNA:   3'- -AGUUC-UAGCUGUuGGAcUGGCACU-GG- -5'
2895 3' -50 NC_001493.1 + 111332 0.77 0.681502
Target:  5'- uUCGGGAugUCGA-GACC-GGCCGUGACCu -3'
miRNA:   3'- -AGUUCU--AGCUgUUGGaCUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 110685 0.72 0.917632
Target:  5'- aCAGGGUCGACGAUC--GCCGUGuCa -3'
miRNA:   3'- aGUUCUAGCUGUUGGacUGGCACuGg -5'
2895 3' -50 NC_001493.1 + 109846 0.66 0.996886
Target:  5'- cUCGAGcgCGcccgggGCGAUgUGACCGuUGACa -3'
miRNA:   3'- -AGUUCuaGC------UGUUGgACUGGC-ACUGg -5'
2895 3' -50 NC_001493.1 + 95197 0.68 0.981016
Target:  5'- aUCAAGAguguccCGAacagUAGCCgGAaauCCGUGACCa -3'
miRNA:   3'- -AGUUCUa-----GCU----GUUGGaCU---GGCACUGG- -5'
2895 3' -50 NC_001493.1 + 94341 0.67 0.994152
Target:  5'- gUAGGAUCGcgugguACGACCUcacGGCCccggguauccugGUGACCu -3'
miRNA:   3'- aGUUCUAGC------UGUUGGA---CUGG------------CACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.