miRNA display CGI


Results 61 - 80 of 562 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 16789 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 17445 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28973 3' -62.9 NC_006146.1 + 17745 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 17932 0.68 0.469517
Target:  5'- aGGGGucuucuaCCUCACucuAGCCCuccAGGCCuccgAGGCCc -3'
miRNA:   3'- gCUCC-------GGAGUG---UCGGG---UCCGG----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 18102 0.68 0.488421
Target:  5'- --cGGaCCUUccaGGCCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gcuCC-GGAGug-UCGGGUCCGG----------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 18465 0.68 0.479374
Target:  5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3'
miRNA:   3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 18616 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 18768 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 18868 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 19021 0.69 0.418529
Target:  5'- gCGAGGCUggGUGGCUgggCAGGCCGGGUCu -3'
miRNA:   3'- -GCUCCGGagUGUCGG---GUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 19577 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28973 3' -62.9 NC_006146.1 + 19606 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 19867 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 19990 0.69 0.46153
Target:  5'- gGAGGCCcCACGaCgCCGGGaagggcuuccuCCGGGCCa -3'
miRNA:   3'- gCUCCGGaGUGUcG-GGUCC-----------GGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 20523 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28973 3' -62.9 NC_006146.1 + 20823 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 20912 0.71 0.332359
Target:  5'- gGAGGCC-CugAGUCC-GGCCgaccugcAGGCCc -3'
miRNA:   3'- gCUCCGGaGugUCGGGuCCGG-------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 21009 0.68 0.505827
Target:  5'- aGGGGucuucuaCCUCACucuAGCCCuccAGGCCcuccgAGGCCc -3'
miRNA:   3'- gCUCC-------GGAGUG---UCGGG---UCCGG-----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 21180 0.68 0.488421
Target:  5'- --cGGaCCUUccaGGCCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gcuCC-GGAGug-UCGGGUCCGG----------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 21543 0.68 0.479374
Target:  5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3'
miRNA:   3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.