miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2898 3' -55.4 NC_001493.1 + 2818 0.66 0.926898
Target:  5'- --aCGAGGGCG-UGcUCAGCGCCa-- -3'
miRNA:   3'- guaGCUCCCGCgGCuAGUUGUGGacc -5'
2898 3' -55.4 NC_001493.1 + 86814 0.66 0.926898
Target:  5'- uCAUCGcGGGCGCCGA-CGGggagucCGCCa-- -3'
miRNA:   3'- -GUAGCuCCCGCGGCUaGUU------GUGGacc -5'
2898 3' -55.4 NC_001493.1 + 118372 0.66 0.926898
Target:  5'- --aCGAGGGCG-UGcUCAGCGCCa-- -3'
miRNA:   3'- guaGCUCCCGCgGCuAGUUGUGGacc -5'
2898 3' -55.4 NC_001493.1 + 64760 0.66 0.91573
Target:  5'- cCGUUGAGGGuCGCCcucuggacGAUCAcgcggcGCACCccGGu -3'
miRNA:   3'- -GUAGCUCCC-GCGG--------CUAGU------UGUGGa-CC- -5'
2898 3' -55.4 NC_001493.1 + 14216 0.66 0.903604
Target:  5'- aCGUCGucGGGCGaCUGAgCGACGCggGGg -3'
miRNA:   3'- -GUAGCu-CCCGC-GGCUaGUUGUGgaCC- -5'
2898 3' -55.4 NC_001493.1 + 129770 0.66 0.903604
Target:  5'- aCGUCGucGGGCGaCUGAgCGACGCggGGg -3'
miRNA:   3'- -GUAGCu-CCCGC-GGCUaGUUGUGgaCC- -5'
2898 3' -55.4 NC_001493.1 + 84962 0.67 0.883657
Target:  5'- gAUCGAGGG-GCUccUCGAUACgUGGu -3'
miRNA:   3'- gUAGCUCCCgCGGcuAGUUGUGgACC- -5'
2898 3' -55.4 NC_001493.1 + 46966 0.67 0.876553
Target:  5'- uCAUCGGccuccgcauccGGGaucUCGAUCAGCAUCUGGc -3'
miRNA:   3'- -GUAGCU-----------CCCgc-GGCUAGUUGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 111343 0.67 0.876553
Target:  5'- uCGUCGAuGGCGCucacCGGUCcGGCACCcGGu -3'
miRNA:   3'- -GUAGCUcCCGCG----GCUAG-UUGUGGaCC- -5'
2898 3' -55.4 NC_001493.1 + 89589 0.67 0.876553
Target:  5'- aCGUCGugacGGGCGCCGuuuUCccgGugGCaCUGGu -3'
miRNA:   3'- -GUAGCu---CCCGCGGCu--AG---UugUG-GACC- -5'
2898 3' -55.4 NC_001493.1 + 82087 0.67 0.868484
Target:  5'- uCGUCGAGGGUcuucuccgcccugGCCacgcGGUCuuugauCGCCUGGc -3'
miRNA:   3'- -GUAGCUCCCG-------------CGG----CUAGuu----GUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 58095 0.67 0.861689
Target:  5'- gCGUCG-GGGUGCUGGUCAuaGgUUGGa -3'
miRNA:   3'- -GUAGCuCCCGCGGCUAGUugUgGACC- -5'
2898 3' -55.4 NC_001493.1 + 57564 0.68 0.845991
Target:  5'- --aCGaAGGGCGCUGA-CGACACa-GGg -3'
miRNA:   3'- guaGC-UCCCGCGGCUaGUUGUGgaCC- -5'
2898 3' -55.4 NC_001493.1 + 110173 0.68 0.837844
Target:  5'- -cUCGAGGGCGgUGAUUaaGAUACCg-- -3'
miRNA:   3'- guAGCUCCCGCgGCUAG--UUGUGGacc -5'
2898 3' -55.4 NC_001493.1 + 62352 0.68 0.829509
Target:  5'- --gCGGGGGCGguugcauuaUCGGUUAcCGCCUGGc -3'
miRNA:   3'- guaGCUCCCGC---------GGCUAGUuGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 118566 0.68 0.829509
Target:  5'- gGUCGAacagaaGGGCG-CGAUCGAC-CCgGGg -3'
miRNA:   3'- gUAGCU------CCCGCgGCUAGUUGuGGaCC- -5'
2898 3' -55.4 NC_001493.1 + 3012 0.68 0.829509
Target:  5'- gGUCGAacagaaGGGCG-CGAUCGAC-CCgGGg -3'
miRNA:   3'- gUAGCU------CCCGCgGCUAGUUGuGGaCC- -5'
2898 3' -55.4 NC_001493.1 + 112668 0.68 0.820994
Target:  5'- gCGUCGAGccuGCGCCcgaGAUCcccgAugGCCUGGa -3'
miRNA:   3'- -GUAGCUCc--CGCGG---CUAG----UugUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 91511 0.68 0.820994
Target:  5'- --aCGGGGGCGuCCGGUcCGugACaUGGg -3'
miRNA:   3'- guaGCUCCCGC-GGCUA-GUugUGgACC- -5'
2898 3' -55.4 NC_001493.1 + 21553 0.69 0.80345
Target:  5'- ----aAGGGCGCCGu---GCAUCUGGg -3'
miRNA:   3'- guagcUCCCGCGGCuaguUGUGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.