miRNA display CGI


Results 1 - 20 of 562 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 3' -62.9 NC_006146.1 + 95470 0.65 0.647758
Target:  5'- gGGGGCuCUgAgAGCuCCGGGUCaaacucgggggagaAGGCCu -3'
miRNA:   3'- gCUCCG-GAgUgUCG-GGUCCGG--------------UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 2765 0.65 0.647758
Target:  5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3'
miRNA:   3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5'
28982 3' -62.9 NC_006146.1 + 5152 0.66 0.640937
Target:  5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3'
miRNA:   3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5'
28982 3' -62.9 NC_006146.1 + 102491 0.66 0.640937
Target:  5'- -aGGGUCUCGCGGaugaCAGaGUCAGGCa -3'
miRNA:   3'- gcUCCGGAGUGUCgg--GUC-CGGUCCGg -5'
28982 3' -62.9 NC_006146.1 + 46112 0.66 0.640937
Target:  5'- gCGAGcaGCagcagGCAuGCCCGGGCCcuGGCCg -3'
miRNA:   3'- -GCUC--CGgag--UGU-CGGGUCCGGu-CCGG- -5'
28982 3' -62.9 NC_006146.1 + 55651 0.66 0.640937
Target:  5'- aGGGGUgcaGCAGCCgGaGCCAGGCg -3'
miRNA:   3'- gCUCCGgagUGUCGGgUcCGGUCCGg -5'
28982 3' -62.9 NC_006146.1 + 47389 0.66 0.640937
Target:  5'- aGGGGCCUgGC-GCUCGGGgC-GGCg -3'
miRNA:   3'- gCUCCGGAgUGuCGGGUCCgGuCCGg -5'
28982 3' -62.9 NC_006146.1 + 42883 0.66 0.640937
Target:  5'- gGGGGgCUCugcCAGCCuCAGGCagcccaccgCGGGCg -3'
miRNA:   3'- gCUCCgGAGu--GUCGG-GUCCG---------GUCCGg -5'
28982 3' -62.9 NC_006146.1 + 108715 0.66 0.640937
Target:  5'- aCGGGGCCUC--GGCCUGGGguaAGGUUa -3'
miRNA:   3'- -GCUCCGGAGugUCGGGUCCgg-UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 137573 0.66 0.639962
Target:  5'- -cGGGUC-CGCugcccgguccuggAGCUCGGGCCggGGGCCg -3'
miRNA:   3'- gcUCCGGaGUG-------------UCGGGUCCGG--UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 130403 0.66 0.635087
Target:  5'- cCGAGGCagaguccgcugccuUUCGCGGCCCcucuGCCccccuucacccaccAGGCCa -3'
miRNA:   3'- -GCUCCG--------------GAGUGUCGGGuc--CGG--------------UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 147743 0.66 0.632163
Target:  5'- -cGGGCCgcgagcgacucugugCAagcgaAGCCCAGGCUcccGGCCu -3'
miRNA:   3'- gcUCCGGa--------------GUg----UCGGGUCCGGu--CCGG- -5'
28982 3' -62.9 NC_006146.1 + 87013 0.66 0.631188
Target:  5'- -uAGGCCUCAUGGCUaguaacagAGGaaacaUCAGGCCg -3'
miRNA:   3'- gcUCCGGAGUGUCGGg-------UCC-----GGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 46384 0.66 0.631188
Target:  5'- -cAGGCCcccgucccUCGCcagGGCCgAGaCCAGGCCg -3'
miRNA:   3'- gcUCCGG--------AGUG---UCGGgUCcGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 168205 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28982 3' -62.9 NC_006146.1 + 93076 0.66 0.631188
Target:  5'- gGuGGCCUaGCAGguaCCUGGGCUcguGGCCg -3'
miRNA:   3'- gCuCCGGAgUGUC---GGGUCCGGu--CCGG- -5'
28982 3' -62.9 NC_006146.1 + 121098 0.66 0.631188
Target:  5'- aGAGGCCgucggaggcgaUCcgguugauGCAGCCgGGGUCgAGGCg -3'
miRNA:   3'- gCUCCGG-----------AG--------UGUCGGgUCCGG-UCCGg -5'
28982 3' -62.9 NC_006146.1 + 162587 0.66 0.631188
Target:  5'- --uGGCC-CACcggGGuCCCGGGCgCGGGCg -3'
miRNA:   3'- gcuCCGGaGUG---UC-GGGUCCG-GUCCGg -5'
28982 3' -62.9 NC_006146.1 + 39163 0.66 0.631188
Target:  5'- gCGAGaGUCUgGgGGCCCAcccggauGCCAaGGCCa -3'
miRNA:   3'- -GCUC-CGGAgUgUCGGGUc------CGGU-CCGG- -5'
28982 3' -62.9 NC_006146.1 + 160891 0.66 0.631188
Target:  5'- aCGAGacggaccuGCCUCuacCGGCCCuGGUCAuGuGCCg -3'
miRNA:   3'- -GCUC--------CGGAGu--GUCGGGuCCGGU-C-CGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.