Results 1 - 20 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28982 | 5' | -53 | NC_006146.1 | + | 67228 | 0.66 | 0.986633 |
Target: 5'- cCCGGCCGacugucGGCUCCcgGACacgcggcucacccGGGCCa -3' miRNA: 3'- -GGCCGGU------CCGGGGuaUUGauu----------UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 24894 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 27972 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 128803 | 0.66 | 0.98647 |
Target: 5'- -aGGCCAGGUagCCCAgcGCcagAAAGuacaGCCg -3' miRNA: 3'- ggCCGGUCCG--GGGUauUGa--UUUC----UGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 39075 | 0.66 | 0.98647 |
Target: 5'- gCCGGCCuccGGUCUgGg----GAAGGCCa -3' miRNA: 3'- -GGCCGGu--CCGGGgUauugaUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 152408 | 0.66 | 0.98647 |
Target: 5'- cCUGGCCcuGgCCCAUGGCaUGuuGACg -3' miRNA: 3'- -GGCCGGucCgGGGUAUUG-AUuuCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 55762 | 0.66 | 0.98647 |
Target: 5'- cCCGGCggCGGGCCagg-GGCagcGAGGCCa -3' miRNA: 3'- -GGCCG--GUCCGGgguaUUGau-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 170679 | 0.66 | 0.98647 |
Target: 5'- -aGGCCAGgggcGCCCCG------GGGACCg -3' miRNA: 3'- ggCCGGUC----CGGGGUauugauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 94806 | 0.66 | 0.98647 |
Target: 5'- -aGGCCAGGCCCgGggguuGCccaccaggaaggUGAGGAUg -3' miRNA: 3'- ggCCGGUCCGGGgUau---UG------------AUUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 21816 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 18738 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 46095 | 0.66 | 0.98647 |
Target: 5'- aCCGGCCGGGCgcugagaaauCUCAUGccCUAcGGAaCCc -3' miRNA: 3'- -GGCCGGUCCG----------GGGUAUu-GAUuUCU-GG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 62125 | 0.66 | 0.98647 |
Target: 5'- aCCGGgCCcgugaAGGCCUCGg----AGGGACCc -3' miRNA: 3'- -GGCC-GG-----UCCGGGGUauugaUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 108569 | 0.66 | 0.98647 |
Target: 5'- cCCGG--GGGCUuuGUuAUUAAAGGCCa -3' miRNA: 3'- -GGCCggUCCGGggUAuUGAUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 33922 | 0.66 | 0.98647 |
Target: 5'- aCCGGaCCGGaggaGCUCCAgAACggggguAGGCCg -3' miRNA: 3'- -GGCC-GGUC----CGGGGUaUUGauu---UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 114148 | 0.66 | 0.98647 |
Target: 5'- cCUGGCCAcGGCagCAU-ACUcucaAGAGACCc -3' miRNA: 3'- -GGCCGGU-CCGggGUAuUGA----UUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 118833 | 0.66 | 0.98647 |
Target: 5'- aCGGCCGGaGaCCCAgcaAGCagcGGACCu -3' miRNA: 3'- gGCCGGUC-CgGGGUa--UUGauuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 12581 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 15660 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 150793 | 0.66 | 0.98647 |
Target: 5'- -gGuGCCGGGCCaCCGUGuccaGCUuguagucagAGAGGCUg -3' miRNA: 3'- ggC-CGGUCCGG-GGUAU----UGA---------UUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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