Results 1 - 20 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 21061 | 0.66 | 0.927196 |
Target: 5'- cGGgUACGCucCCGCGG-CACCGGGGa -3' miRNA: 3'- cUUgAUGUGc-GGCGCUaGUGGCUCCg -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 87667 | 0.66 | 0.941754 |
Target: 5'- gGAGCcgGCuccucguACGCCGCGGggggCAggucCCGGGGUa -3' miRNA: 3'- -CUUGa-UG-------UGCGGCGCUa---GU----GGCUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 35602 | 0.66 | 0.942219 |
Target: 5'- cAGCUcACGCGagaCGUGGUCACCGcacGCa -3' miRNA: 3'- cUUGA-UGUGCg--GCGCUAGUGGCuc-CG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 19748 | 0.66 | 0.927196 |
Target: 5'- aGGgUACGCucCCGCGG-CACCGGGGa -3' miRNA: 3'- cUUgAUGUGc-GGCGCUaGUGGCUCCg -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 27951 | 0.66 | 0.937456 |
Target: 5'- cGAAC-AUAuCGUgGUGAUCgAUCGGGGCa -3' miRNA: 3'- -CUUGaUGU-GCGgCGCUAG-UGGCUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 13563 | 0.66 | 0.927196 |
Target: 5'- uGGGCccCACGaCCGCGcggccgCACaCGGGGCa -3' miRNA: 3'- -CUUGauGUGC-GGCGCua----GUG-GCUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 129118 | 0.66 | 0.927196 |
Target: 5'- uGGGCccCACGaCCGCGcggccgCACaCGGGGCa -3' miRNA: 3'- -CUUGauGUGC-GGCGCua----GUG-GCUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 30181 | 0.66 | 0.929327 |
Target: 5'- gGAGCga---GCCGUGAUCAUCGAugaguuucagaagauGGCg -3' miRNA: 3'- -CUUGaugugCGGCGCUAGUGGCU---------------CCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 113417 | 0.66 | 0.932448 |
Target: 5'- uGGCUGgGCGaCCGCGcGUCucuuUCGGGGUa -3' miRNA: 3'- cUUGAUgUGC-GGCGC-UAGu---GGCUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 129978 | 0.66 | 0.937456 |
Target: 5'- cAugUACACGUgCGCGAggACCguGAGGUc -3' miRNA: 3'- cUugAUGUGCG-GCGCUagUGG--CUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 126582 | 0.66 | 0.937456 |
Target: 5'- -uGCUuCACGCCaGCcGUCAucCCGAGGg -3' miRNA: 3'- cuUGAuGUGCGG-CGcUAGU--GGCUCCg -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 14424 | 0.66 | 0.937456 |
Target: 5'- cAugUACACGUgCGCGAggACCguGAGGUc -3' miRNA: 3'- cUugAUGUGCG-GCGCUagUGG--CUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 5655 | 0.66 | 0.937456 |
Target: 5'- aGAgUACAUcggaGCCGgGuUCACCGGGGa -3' miRNA: 3'- cUUgAUGUG----CGGCgCuAGUGGCUCCg -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 39015 | 0.66 | 0.932448 |
Target: 5'- uGAGCUugGugaGCC-CGGUCgucaggcuGCUGAGGCa -3' miRNA: 3'- -CUUGAugUg--CGGcGCUAG--------UGGCUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 19604 | 0.66 | 0.921699 |
Target: 5'- gGAGCgUACcCuCCGCGAaaUACCGGGGCc -3' miRNA: 3'- -CUUG-AUGuGcGGCGCUa-GUGGCUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 36608 | 0.66 | 0.927196 |
Target: 5'- -cACUGCGCuGCUgGUGGUgGCCGugGGGCu -3' miRNA: 3'- cuUGAUGUG-CGG-CGCUAgUGGC--UCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 60288 | 0.66 | 0.932448 |
Target: 5'- aGACUGgggauCGCGcCCGCGGUauucCGCgGAGGUg -3' miRNA: 3'- cUUGAU-----GUGC-GGCGCUA----GUGgCUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 112672 | 0.66 | 0.934481 |
Target: 5'- cGAGcCUGCGCccgagauccccgaugGCCuggaggaacggGCGAUC-CCGGGGCu -3' miRNA: 3'- -CUU-GAUGUG---------------CGG-----------CGCUAGuGGCUCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 87182 | 0.66 | 0.936966 |
Target: 5'- cGAGUUGCAccuccucCGCCGCaccuUCACCG-GGCg -3' miRNA: 3'- -CUUGAUGU-------GCGGCGcu--AGUGGCuCCG- -5' |
|||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 11027 | 0.66 | 0.937456 |
Target: 5'- -uGCUuCACGCCaGCcGUCAucCCGAGGg -3' miRNA: 3'- cuUGAuGUGCGG-CGcUAGU--GGCUCCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home