miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2900 5' -54.6 NC_001493.1 + 28329 1.12 0.002219
Target:  5'- gGAACUACACGCCGCGAUCACCGAGGCg -3'
miRNA:   3'- -CUUGAUGUGCGGCGCUAGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 13020 0.78 0.345824
Target:  5'- uGAGCUGCAUGCuCGUGGugaccucccugguguUCGCCGGGGUc -3'
miRNA:   3'- -CUUGAUGUGCG-GCGCU---------------AGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 128575 0.78 0.345824
Target:  5'- uGAGCUGCAUGCuCGUGGugaccucccugguguUCGCCGGGGUc -3'
miRNA:   3'- -CUUGAUGUGCG-GCGCU---------------AGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 133341 0.76 0.463433
Target:  5'- --cCUACGCGCCacccgaGCGAUC-CCGGGGUc -3'
miRNA:   3'- cuuGAUGUGCGG------CGCUAGuGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 17787 0.76 0.463433
Target:  5'- --cCUACGCGCCacccgaGCGAUC-CCGGGGUc -3'
miRNA:   3'- cuuGAUGUGCGG------CGCUAGuGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 107006 0.76 0.463433
Target:  5'- ------gGCGCCGUGAaUACCGAGGCg -3'
miRNA:   3'- cuugaugUGCGGCGCUaGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 103429 0.74 0.521568
Target:  5'- -cACUACACGCCGUGcacUCAgCCG-GGCu -3'
miRNA:   3'- cuUGAUGUGCGGCGCu--AGU-GGCuCCG- -5'
2900 5' -54.6 NC_001493.1 + 120689 0.73 0.592613
Target:  5'- gGGACUcACcCGCCagcccccCGGUCACCGGGGCc -3'
miRNA:   3'- -CUUGA-UGuGCGGc------GCUAGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 5134 0.73 0.592613
Target:  5'- gGGACUcACcCGCCagcccccCGGUCACCGGGGCc -3'
miRNA:   3'- -CUUGA-UGuGCGGc------GCUAGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 79090 0.72 0.644367
Target:  5'- uGGACcgggaGCACGUCggGCGGUCugACCGAGGCc -3'
miRNA:   3'- -CUUGa----UGUGCGG--CGCUAG--UGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 92451 0.72 0.644367
Target:  5'- ---aUACACGCCGCGGaagauccugaucUCGCCGccGCa -3'
miRNA:   3'- cuugAUGUGCGGCGCU------------AGUGGCucCG- -5'
2900 5' -54.6 NC_001493.1 + 33096 0.72 0.654721
Target:  5'- cGAgUACACGaagaaGCGAgcgaaccugaUCGCCGAGGCg -3'
miRNA:   3'- cUUgAUGUGCgg---CGCU----------AGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 5315 0.72 0.675365
Target:  5'- cGGCUGCACGCuCGgcccCGGUgACCGGGGg -3'
miRNA:   3'- cUUGAUGUGCG-GC----GCUAgUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 120869 0.72 0.675365
Target:  5'- cGGCUGCACGCuCGgcccCGGUgACCGGGGg -3'
miRNA:   3'- cUUGAUGUGCG-GC----GCUAgUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 95242 0.71 0.695863
Target:  5'- aGAAauauuCGCGUCGCGGUCACgGguGGGCa -3'
miRNA:   3'- -CUUgau--GUGCGGCGCUAGUGgC--UCCG- -5'
2900 5' -54.6 NC_001493.1 + 64956 0.71 0.706035
Target:  5'- cGGCUGCgACGagCGCGAUaACCGGGGUg -3'
miRNA:   3'- cUUGAUG-UGCg-GCGCUAgUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 65179 0.71 0.716142
Target:  5'- cGAACgGCACGCCGCGGU---UGAGcGCa -3'
miRNA:   3'- -CUUGaUGUGCGGCGCUAgugGCUC-CG- -5'
2900 5' -54.6 NC_001493.1 + 31067 0.7 0.774907
Target:  5'- gGGACggucCACGCCGUGAccgguggCAUgGGGGCg -3'
miRNA:   3'- -CUUGau--GUGCGGCGCUa------GUGgCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 42179 0.7 0.774907
Target:  5'- cGGACgGCGCGUgGCGcgcacacuUCACCGGGGa -3'
miRNA:   3'- -CUUGaUGUGCGgCGCu-------AGUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 102294 0.7 0.774907
Target:  5'- aGGACcgGC-CGUCGCGAccccccgaccCGCCGAGGCc -3'
miRNA:   3'- -CUUGa-UGuGCGGCGCUa---------GUGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.