Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2900 | 5' | -54.6 | NC_001493.1 | + | 81789 | 0.67 | 0.90997 |
Target: 5'- uGGCUcGCGCGaCGgaGAucaUCACCGGGGCg -3' miRNA: 3'- cUUGA-UGUGCgGCg-CU---AGUGGCUCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 56269 | 0.69 | 0.83739 |
Target: 5'- -cACUGCugGUaCGCcAUCAcuuccCCGAGGCg -3' miRNA: 3'- cuUGAUGugCG-GCGcUAGU-----GGCUCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 111756 | 0.69 | 0.83739 |
Target: 5'- ----gACAC-CCGUGAUCACCacGGGCg -3' miRNA: 3'- cuugaUGUGcGGCGCUAGUGGc-UCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 10700 | 0.69 | 0.83739 |
Target: 5'- cGGAUcGCGaaccgGCCGCGGUCACCGAucGCc -3' miRNA: 3'- -CUUGaUGUg----CGGCGCUAGUGGCUc-CG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 126254 | 0.69 | 0.83739 |
Target: 5'- cGGAUcGCGaaccgGCCGCGGUCACCGAucGCc -3' miRNA: 3'- -CUUGaUGUg----CGGCGCUAGUGGCUc-CG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 60206 | 0.68 | 0.853643 |
Target: 5'- cGAACUAUcaACcUCGCGggCGCCGGuGGCu -3' miRNA: 3'- -CUUGAUG--UGcGGCGCuaGUGGCU-CCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 61465 | 0.68 | 0.861464 |
Target: 5'- gGGGCUuauaGCGCGCgGCuGUUcgGCCGGGGUg -3' miRNA: 3'- -CUUGA----UGUGCGgCGcUAG--UGGCUCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 90515 | 0.67 | 0.88363 |
Target: 5'- ----cGCACaCCGCGGUCGggUCGAGGUc -3' miRNA: 3'- cuugaUGUGcGGCGCUAGU--GGCUCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 65865 | 0.67 | 0.890568 |
Target: 5'- --uUUACgACGCgGCGGUCGCCGu-GCa -3' miRNA: 3'- cuuGAUG-UGCGgCGCUAGUGGCucCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 113681 | 0.7 | 0.784299 |
Target: 5'- aGAACgagggGCAC-CUGCGGUUACUguGGGGCa -3' miRNA: 3'- -CUUGa----UGUGcGGCGCUAGUGG--CUCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 42179 | 0.7 | 0.774907 |
Target: 5'- cGGACgGCGCGUgGCGcgcacacuUCACCGGGGa -3' miRNA: 3'- -CUUGaUGUGCGgCGCu-------AGUGGCUCCg -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 102294 | 0.7 | 0.774907 |
Target: 5'- aGGACcgGC-CGUCGCGAccccccgaccCGCCGAGGCc -3' miRNA: 3'- -CUUGa-UGuGCGGCGCUa---------GUGGCUCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 128575 | 0.78 | 0.345824 |
Target: 5'- uGAGCUGCAUGCuCGUGGugaccucccugguguUCGCCGGGGUc -3' miRNA: 3'- -CUUGAUGUGCG-GCGCU---------------AGUGGCUCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 103429 | 0.74 | 0.521568 |
Target: 5'- -cACUACACGCCGUGcacUCAgCCG-GGCu -3' miRNA: 3'- cuUGAUGUGCGGCGCu--AGU-GGCuCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 5134 | 0.73 | 0.592613 |
Target: 5'- gGGACUcACcCGCCagcccccCGGUCACCGGGGCc -3' miRNA: 3'- -CUUGA-UGuGCGGc------GCUAGUGGCUCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 120689 | 0.73 | 0.592613 |
Target: 5'- gGGACUcACcCGCCagcccccCGGUCACCGGGGCc -3' miRNA: 3'- -CUUGA-UGuGCGGc------GCUAGUGGCUCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 92451 | 0.72 | 0.644367 |
Target: 5'- ---aUACACGCCGCGGaagauccugaucUCGCCGccGCa -3' miRNA: 3'- cuugAUGUGCGGCGCU------------AGUGGCucCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 33096 | 0.72 | 0.654721 |
Target: 5'- cGAgUACACGaagaaGCGAgcgaaccugaUCGCCGAGGCg -3' miRNA: 3'- cUUgAUGUGCgg---CGCU----------AGUGGCUCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 95242 | 0.71 | 0.695863 |
Target: 5'- aGAAauauuCGCGUCGCGGUCACgGguGGGCa -3' miRNA: 3'- -CUUgau--GUGCGGCGCUAGUGgC--UCCG- -5' |
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2900 | 5' | -54.6 | NC_001493.1 | + | 65179 | 0.71 | 0.716142 |
Target: 5'- cGAACgGCACGCCGCGGU---UGAGcGCa -3' miRNA: 3'- -CUUGaUGUGCGGCGCUAgugGCUC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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