miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2900 5' -54.6 NC_001493.1 + 3255 0.67 0.897273
Target:  5'- gGAACcggGCACcgGCCGUGAcgagC-CCGAGGUg -3'
miRNA:   3'- -CUUGa--UGUG--CGGCGCUa---GuGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 3797 0.69 0.811595
Target:  5'- cGAGgaGCGCGCCccuguGCGAaccgguauUCGCgGGGGCg -3'
miRNA:   3'- -CUUgaUGUGCGG-----CGCU--------AGUGgCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 5134 0.73 0.592613
Target:  5'- gGGACUcACcCGCCagcccccCGGUCACCGGGGCc -3'
miRNA:   3'- -CUUGA-UGuGCGGc------GCUAGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 5315 0.72 0.675365
Target:  5'- cGGCUGCACGCuCGgcccCGGUgACCGGGGg -3'
miRNA:   3'- cUUGAUGUGCG-GC----GCUAgUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 5655 0.66 0.937456
Target:  5'- aGAgUACAUcggaGCCGgGuUCACCGGGGa -3'
miRNA:   3'- cUUgAUGUG----CGGCgCuAGUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 8471 0.67 0.901826
Target:  5'- cGGGCacgGCGCGCCacggagucacuccuGUGGcgccgCGCCGGGGCu -3'
miRNA:   3'- -CUUGa--UGUGCGG--------------CGCUa----GUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 10700 0.69 0.83739
Target:  5'- cGGAUcGCGaaccgGCCGCGGUCACCGAucGCc -3'
miRNA:   3'- -CUUGaUGUg----CGGCGCUAGUGGCUc-CG- -5'
2900 5' -54.6 NC_001493.1 + 11027 0.66 0.937456
Target:  5'- -uGCUuCACGCCaGCcGUCAucCCGAGGg -3'
miRNA:   3'- cuUGAuGUGCGG-CGcUAGU--GGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 12406 0.67 0.890568
Target:  5'- uGGACcGCGC-CCGCGAUCGCUcaucauGGGGa -3'
miRNA:   3'- -CUUGaUGUGcGGCGCUAGUGG------CUCCg -5'
2900 5' -54.6 NC_001493.1 + 13020 0.78 0.345824
Target:  5'- uGAGCUGCAUGCuCGUGGugaccucccugguguUCGCCGGGGUc -3'
miRNA:   3'- -CUUGAUGUGCG-GCGCU---------------AGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 13563 0.66 0.927196
Target:  5'- uGGGCccCACGaCCGCGcggccgCACaCGGGGCa -3'
miRNA:   3'- -CUUGauGUGC-GGCGCua----GUG-GCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 14424 0.66 0.937456
Target:  5'- cAugUACACGUgCGCGAggACCguGAGGUc -3'
miRNA:   3'- cUugAUGUGCG-GCGCUagUGG--CUCCG- -5'
2900 5' -54.6 NC_001493.1 + 17787 0.76 0.463433
Target:  5'- --cCUACGCGCCacccgaGCGAUC-CCGGGGUc -3'
miRNA:   3'- cuuGAUGUGCGG------CGCUAGuGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 19604 0.66 0.921699
Target:  5'- gGAGCgUACcCuCCGCGAaaUACCGGGGCc -3'
miRNA:   3'- -CUUG-AUGuGcGGCGCUa-GUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 19748 0.66 0.927196
Target:  5'- aGGgUACGCucCCGCGG-CACCGGGGa -3'
miRNA:   3'- cUUgAUGUGc-GGCGCUaGUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 21061 0.66 0.927196
Target:  5'- cGGgUACGCucCCGCGG-CACCGGGGa -3'
miRNA:   3'- cUUgAUGUGc-GGCGCUaGUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 24004 0.67 0.914186
Target:  5'- cGAGCcAUAgaGCCGCcuucucggccucuaGAUCACgGGGGCg -3'
miRNA:   3'- -CUUGaUGUg-CGGCG--------------CUAGUGgCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 27951 0.66 0.937456
Target:  5'- cGAAC-AUAuCGUgGUGAUCgAUCGGGGCa -3'
miRNA:   3'- -CUUGaUGU-GCGgCGCUAG-UGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 28329 1.12 0.002219
Target:  5'- gGAACUACACGCCGCGAUCACCGAGGCg -3'
miRNA:   3'- -CUUGAUGUGCGGCGCUAGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 28440 0.69 0.83739
Target:  5'- aGAGCgcCACGuuGCGAg---CGAGGCg -3'
miRNA:   3'- -CUUGauGUGCggCGCUagugGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.