miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 5' -55.3 NC_006146.1 + 70861 0.7 0.751007
Target:  5'- uUCCCGGCGC--AGguGGUUuGUCAGg -3'
miRNA:   3'- gAGGGUCGUGcaUCguCCAAuCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 21972 0.68 0.857193
Target:  5'- aUUCCAGCcgagaaGUGGCGGGgaAGCUGGu -3'
miRNA:   3'- gAGGGUCGug----CAUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 9069 0.68 0.841207
Target:  5'- uCUCCCacGGgGCGUGGCccaaaAGGaaAGCCGGg -3'
miRNA:   3'- -GAGGG--UCgUGCAUCG-----UCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 123679 0.68 0.832921
Target:  5'- --gCCAGCucaagauCGUGGCGGaGgcGGCCAGg -3'
miRNA:   3'- gagGGUCGu------GCAUCGUC-CaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 43585 0.68 0.832921
Target:  5'- uUCCCGGggaGCGgGGCGGGa-GGCCGGg -3'
miRNA:   3'- gAGGGUCg--UGCaUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 23964 0.69 0.82445
Target:  5'- -cCCCGGguCG-GGUGGGggAGCCGGa -3'
miRNA:   3'- gaGGGUCguGCaUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 108321 0.69 0.815801
Target:  5'- aUCuCCAGCGag-AGCAGGUUGGCa-- -3'
miRNA:   3'- gAG-GGUCGUgcaUCGUCCAAUCGguc -5'
29002 5' -55.3 NC_006146.1 + 167478 0.69 0.788873
Target:  5'- -gCCCAGCACGUAGUAuuGGcacccuGCCAc -3'
miRNA:   3'- gaGGGUCGUGCAUCGU--CCaau---CGGUc -5'
29002 5' -55.3 NC_006146.1 + 115542 0.7 0.77019
Target:  5'- gUCCCGcGCGCgGUGGCGGG--GGCUGGa -3'
miRNA:   3'- gAGGGU-CGUG-CAUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 110094 0.68 0.864879
Target:  5'- gUCCCuGCuuAUGUAGUu-GUUGGCCAGg -3'
miRNA:   3'- gAGGGuCG--UGCAUCGucCAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 123617 0.67 0.889389
Target:  5'- gUCCCGGCugcaggACGUucuGCAGGaccucgucacccgGGCCAGg -3'
miRNA:   3'- gAGGGUCG------UGCAu--CGUCCaa-----------UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 99554 0.67 0.893443
Target:  5'- uUCCCacuGGCACcccAGCAGGUggaaaGGCCAa -3'
miRNA:   3'- gAGGG---UCGUGca-UCGUCCAa----UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 70227 0.66 0.93442
Target:  5'- --aCCAGCGCGUugaaguAGCAGGgguaccCCAGg -3'
miRNA:   3'- gagGGUCGUGCA------UCGUCCaauc--GGUC- -5'
29002 5' -55.3 NC_006146.1 + 109589 0.66 0.93442
Target:  5'- gUCgUAGCACuUGGaCAGGacGGCCAGg -3'
miRNA:   3'- gAGgGUCGUGcAUC-GUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 27336 0.66 0.93442
Target:  5'- cCUCCaaaaaCAGCGgGUGGCGcGGcaaGGCCGGg -3'
miRNA:   3'- -GAGG-----GUCGUgCAUCGU-CCaa-UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 108543 0.66 0.912447
Target:  5'- cCUCuCCGGCGCGgcGUuGGagUGGCUGGg -3'
miRNA:   3'- -GAG-GGUCGUGCauCGuCCa-AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 51404 0.66 0.912447
Target:  5'- aUCCCGGCaaaauuGCGaccGCAGG-UGGCUAGu -3'
miRNA:   3'- gAGGGUCG------UGCau-CGUCCaAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 167912 0.67 0.900014
Target:  5'- -cCCCAGCAUGac-CAGGUacUGGCCGu -3'
miRNA:   3'- gaGGGUCGUGCaucGUCCA--AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 115360 0.67 0.900014
Target:  5'- uUCCUGGCcgGCGUGGCGGcggAGCUGGa -3'
miRNA:   3'- gAGGGUCG--UGCAUCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 113810 0.67 0.893443
Target:  5'- gUCgCGGgGCuGUcguacAGCAGGUUGGCCAu -3'
miRNA:   3'- gAGgGUCgUG-CA-----UCGUCCAAUCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.