Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29011 | 3' | -61.9 | NC_006146.1 | + | 53937 | 0.66 | 0.729298 |
Target: 5'- --cUCCUCGAgguccggacgcaGGGGCUCaCGGGcGUUUu -3' miRNA: 3'- ggaAGGAGCU------------CCCCGAGgGCCC-CAGA- -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 62988 | 0.66 | 0.729298 |
Target: 5'- aUCUUCCUgGcccuGGGCUCC-GGGaGUCUg -3' miRNA: 3'- -GGAAGGAgCuc--CCCGAGGgCCC-CAGA- -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 48552 | 0.66 | 0.726505 |
Target: 5'- gCCguugccgCCUCGAccuuggaaucauccGGGGCcUCgGGGGUCa -3' miRNA: 3'- -GGaa-----GGAGCU--------------CCCCGaGGgCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 115903 | 0.66 | 0.710559 |
Target: 5'- uCCcgCC-CGGGGGGCUUCCGGccaccccgGGUa- -3' miRNA: 3'- -GGaaGGaGCUCCCCGAGGGCC--------CCAga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 52100 | 0.66 | 0.701097 |
Target: 5'- ----gUUCGAGGuGCUgCUCGGGGUCUa -3' miRNA: 3'- ggaagGAGCUCCcCGA-GGGCCCCAGA- -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 91757 | 0.66 | 0.691583 |
Target: 5'- uCCgggUUCUUGGGuGGGUgCCUGGGGUg- -3' miRNA: 3'- -GGa--AGGAGCUC-CCCGaGGGCCCCAga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 157437 | 0.66 | 0.690629 |
Target: 5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3' miRNA: 3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 154359 | 0.66 | 0.690629 |
Target: 5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3' miRNA: 3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 151281 | 0.66 | 0.690629 |
Target: 5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3' miRNA: 3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 148203 | 0.66 | 0.690629 |
Target: 5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3' miRNA: 3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 145125 | 0.66 | 0.690629 |
Target: 5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3' miRNA: 3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 142047 | 0.66 | 0.690629 |
Target: 5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3' miRNA: 3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 118622 | 0.66 | 0.682024 |
Target: 5'- --aUCCUCcaguacguGGGGGCgCCCGGGGcCc -3' miRNA: 3'- ggaAGGAGc-------UCCCCGaGGGCCCCaGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 108591 | 0.67 | 0.671468 |
Target: 5'- cUCUggCCUCGcuGGGCUCUCccagguaGGGGUCc -3' miRNA: 3'- -GGAa-GGAGCucCCCGAGGG-------CCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 112532 | 0.67 | 0.662805 |
Target: 5'- gCCUgggucaCCUCGAacucGGaGCUcagaCCCGGGGUCg -3' miRNA: 3'- -GGAa-----GGAGCUc---CC-CGA----GGGCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 170402 | 0.67 | 0.662805 |
Target: 5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3' miRNA: 3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 169471 | 0.67 | 0.662805 |
Target: 5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3' miRNA: 3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 168539 | 0.67 | 0.662805 |
Target: 5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3' miRNA: 3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 167607 | 0.67 | 0.662805 |
Target: 5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3' miRNA: 3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 8276 | 0.67 | 0.653159 |
Target: 5'- cCCgUUCUCucuGGGaGCcccacUCCCGGGGUCg -3' miRNA: 3'- -GGaAGGAGcu-CCC-CG-----AGGGCCCCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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