miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29011 3' -61.9 NC_006146.1 + 62988 0.66 0.729298
Target:  5'- aUCUUCCUgGcccuGGGCUCC-GGGaGUCUg -3'
miRNA:   3'- -GGAAGGAgCuc--CCCGAGGgCCC-CAGA- -5'
29011 3' -61.9 NC_006146.1 + 53937 0.66 0.729298
Target:  5'- --cUCCUCGAgguccggacgcaGGGGCUCaCGGGcGUUUu -3'
miRNA:   3'- ggaAGGAGCU------------CCCCGAGgGCCC-CAGA- -5'
29011 3' -61.9 NC_006146.1 + 48552 0.66 0.726505
Target:  5'- gCCguugccgCCUCGAccuuggaaucauccGGGGCcUCgGGGGUCa -3'
miRNA:   3'- -GGaa-----GGAGCU--------------CCCCGaGGgCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 115903 0.66 0.710559
Target:  5'- uCCcgCC-CGGGGGGCUUCCGGccaccccgGGUa- -3'
miRNA:   3'- -GGaaGGaGCUCCCCGAGGGCC--------CCAga -5'
29011 3' -61.9 NC_006146.1 + 52100 0.66 0.701097
Target:  5'- ----gUUCGAGGuGCUgCUCGGGGUCUa -3'
miRNA:   3'- ggaagGAGCUCCcCGA-GGGCCCCAGA- -5'
29011 3' -61.9 NC_006146.1 + 91757 0.66 0.691583
Target:  5'- uCCgggUUCUUGGGuGGGUgCCUGGGGUg- -3'
miRNA:   3'- -GGa--AGGAGCUC-CCCGaGGGCCCCAga -5'
29011 3' -61.9 NC_006146.1 + 154359 0.66 0.690629
Target:  5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3'
miRNA:   3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 151281 0.66 0.690629
Target:  5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3'
miRNA:   3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 157437 0.66 0.690629
Target:  5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3'
miRNA:   3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 145125 0.66 0.690629
Target:  5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3'
miRNA:   3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 142047 0.66 0.690629
Target:  5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3'
miRNA:   3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 148203 0.66 0.690629
Target:  5'- aCUuuggCCUCuGGGGccacccgGGCUgCCGGGGUCc -3'
miRNA:   3'- gGAa---GGAG-CUCC-------CCGAgGGCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 118622 0.66 0.682024
Target:  5'- --aUCCUCcaguacguGGGGGCgCCCGGGGcCc -3'
miRNA:   3'- ggaAGGAGc-------UCCCCGaGGGCCCCaGa -5'
29011 3' -61.9 NC_006146.1 + 108591 0.67 0.671468
Target:  5'- cUCUggCCUCGcuGGGCUCUCccagguaGGGGUCc -3'
miRNA:   3'- -GGAa-GGAGCucCCCGAGGG-------CCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 169471 0.67 0.662805
Target:  5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3'
miRNA:   3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5'
29011 3' -61.9 NC_006146.1 + 112532 0.67 0.662805
Target:  5'- gCCUgggucaCCUCGAacucGGaGCUcagaCCCGGGGUCg -3'
miRNA:   3'- -GGAa-----GGAGCUc---CC-CGA----GGGCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 170402 0.67 0.662805
Target:  5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3'
miRNA:   3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5'
29011 3' -61.9 NC_006146.1 + 168539 0.67 0.662805
Target:  5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3'
miRNA:   3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5'
29011 3' -61.9 NC_006146.1 + 167607 0.67 0.662805
Target:  5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3'
miRNA:   3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5'
29011 3' -61.9 NC_006146.1 + 8276 0.67 0.653159
Target:  5'- cCCgUUCUCucuGGGaGCcccacUCCCGGGGUCg -3'
miRNA:   3'- -GGaAGGAGcu-CCC-CG-----AGGGCCCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.