miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 170210 0.72 0.528143
Target:  5'- cUGGCgGGggCCAGCgCGGGgucccgggGCGGGg -3'
miRNA:   3'- cGCCGgUCaaGGUCG-GUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 170158 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 170039 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 169279 0.72 0.528143
Target:  5'- cUGGCgGGggCCAGCgCGGGgucccgggGCGGGg -3'
miRNA:   3'- cGCCGgUCaaGGUCG-GUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 169227 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 169167 0.68 0.753111
Target:  5'- aGgGGCCGGcgCCuGCagggGGGgccgGCGGGg -3'
miRNA:   3'- -CgCCGGUCaaGGuCGg---UCCaa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 169107 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 168481 0.66 0.840082
Target:  5'- cCGGCCucacgUCCacGGUCGGGggGcCGGGg -3'
miRNA:   3'- cGCCGGuca--AGG--UCGGUCCaaC-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 168347 0.72 0.528143
Target:  5'- cUGGCgGGggCCAGCgCGGGgucccgggGCGGGg -3'
miRNA:   3'- cGCCGgUCaaGGUCG-GUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 168295 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 168235 0.68 0.753111
Target:  5'- aGgGGCCGGcgCCuGCagggGGGgccgGCGGGg -3'
miRNA:   3'- -CgCCGGUCaaGGuCGg---UCCaa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 168175 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 167415 0.72 0.528143
Target:  5'- cUGGCgGGggCCAGCgCGGGgucccgggGCGGGg -3'
miRNA:   3'- cGCCGgUCaaGGUCG-GUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 167363 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 167303 0.68 0.753111
Target:  5'- aGgGGCCGGcgCCuGCagggGGGgccgGCGGGg -3'
miRNA:   3'- -CgCCGGUCaaGGuCGg---UCCaa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 167243 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 162394 0.66 0.855569
Target:  5'- cGCGcCCGGgaCCccggugGGCCAGGaugGUGGGg -3'
miRNA:   3'- -CGCcGGUCaaGG------UCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 162047 0.66 0.832068
Target:  5'- uGUGGgaaaCCGGUUCCA-CCGcGGggGUGGGu -3'
miRNA:   3'- -CGCC----GGUCAAGGUcGGU-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 161417 0.69 0.656107
Target:  5'- -aGGCCuGUgCCAGgCGGGUguggccccGCGGGa -3'
miRNA:   3'- cgCCGGuCAaGGUCgGUCCAa-------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 157733 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.