miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 3' -61.8 NC_006146.1 + 47857 1.12 0.000726
Target:  5'- aCCCUCUCCUCCAGCGCCCGGACCUGGg -3'
miRNA:   3'- -GGGAGAGGAGGUCGCGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 121124 0.81 0.10003
Target:  5'- gCCC-CUCCUgagacacaucagCCGGCGUCUGGGCCUGGg -3'
miRNA:   3'- -GGGaGAGGA------------GGUCGCGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 137703 0.79 0.148095
Target:  5'- cCCCUCcggCCUCCccccggGGUGCCCGGGCCUa- -3'
miRNA:   3'- -GGGAGa--GGAGG------UCGCGGGCCUGGAcc -5'
29015 3' -61.8 NC_006146.1 + 156892 0.78 0.175142
Target:  5'- gCCCUCcgCCuUCCAGCaccaGCCCGGccgagGCCUGGg -3'
miRNA:   3'- -GGGAGa-GG-AGGUCG----CGGGCC-----UGGACC- -5'
29015 3' -61.8 NC_006146.1 + 13076 0.78 0.175142
Target:  5'- uCCC-CUCCggggCCAGCGCggaggaguacUCGGACCUGGc -3'
miRNA:   3'- -GGGaGAGGa---GGUCGCG----------GGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 106201 0.77 0.192506
Target:  5'- uCCCgggcCUCCUgCCAGgGCCUGGuguCCUGGg -3'
miRNA:   3'- -GGGa---GAGGA-GGUCgCGGGCCu--GGACC- -5'
29015 3' -61.8 NC_006146.1 + 118205 0.76 0.216315
Target:  5'- cCCCUgaCCUCC--CGCCCGGAgCUGGa -3'
miRNA:   3'- -GGGAgaGGAGGucGCGGGCCUgGACC- -5'
29015 3' -61.8 NC_006146.1 + 126785 0.76 0.226525
Target:  5'- cCCCcCUCCUCgCcgGGCaGCCgGGGCCUGGa -3'
miRNA:   3'- -GGGaGAGGAG-G--UCG-CGGgCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 155854 0.75 0.253268
Target:  5'- uCCaCUUaCCUCUGGCccgagaccuggggGCCCGGGCCUGGa -3'
miRNA:   3'- -GG-GAGaGGAGGUCG-------------CGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 143543 0.75 0.253268
Target:  5'- uCCaCUUaCCUCUGGCccgagaccuggggGCCCGGGCCUGGa -3'
miRNA:   3'- -GG-GAGaGGAGGUCG-------------CGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 152776 0.75 0.253268
Target:  5'- uCCaCUUaCCUCUGGCccgagaccuggggGCCCGGGCCUGGa -3'
miRNA:   3'- -GG-GAGaGGAGGUCG-------------CGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 146621 0.75 0.253268
Target:  5'- uCCaCUUaCCUCUGGCccgagaccuggggGCCCGGGCCUGGa -3'
miRNA:   3'- -GG-GAGaGGAGGUCG-------------CGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 33525 0.75 0.259618
Target:  5'- gCCUC-CCUCCcuagguuGUGCCCGGcuuGCCUGGc -3'
miRNA:   3'- gGGAGaGGAGGu------CGCGGGCC---UGGACC- -5'
29015 3' -61.8 NC_006146.1 + 149705 0.75 0.265502
Target:  5'- aCCUCUggcCCgagaCCugGGgGCCCGGGCCUGGa -3'
miRNA:   3'- gGGAGA---GGa---GG--UCgCGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 146821 0.74 0.296551
Target:  5'- uCCCaggCgaggCCgcgCCAGCguagaGCCCGGGCCUGGc -3'
miRNA:   3'- -GGGa--Ga---GGa--GGUCG-----CGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 117534 0.74 0.309738
Target:  5'- gCCUCUCCcUCGGgGCCUGGGCCg-- -3'
miRNA:   3'- gGGAGAGGaGGUCgCGGGCCUGGacc -5'
29015 3' -61.8 NC_006146.1 + 23826 0.73 0.337439
Target:  5'- uCUCUCUCC-CUGGCcuuucccuacGCCgGGACCUGGc -3'
miRNA:   3'- -GGGAGAGGaGGUCG----------CGGgCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 156057 0.73 0.34464
Target:  5'- cCCCUCggCCUCCcGCGgcCCCGGGCCcGa -3'
miRNA:   3'- -GGGAGa-GGAGGuCGC--GGGCCUGGaCc -5'
29015 3' -61.8 NC_006146.1 + 101621 0.72 0.362369
Target:  5'- aCCCUCUUUaggugggCCAGCugcaucuucgaggagGaCCCGGACCUGGc -3'
miRNA:   3'- -GGGAGAGGa------GGUCG---------------C-GGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 128029 0.72 0.37762
Target:  5'- cCCCUUcgCCUCCcaccaguggaaccuGCGCgUGGGCCUGGc -3'
miRNA:   3'- -GGGAGa-GGAGGu-------------CGCGgGCCUGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.