miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 5' -56.9 NC_006146.1 + 10227 0.66 0.907461
Target:  5'- cGGCCcUGGUCAuguGcCGGCUCCu-GAAGGc -3'
miRNA:   3'- -CCGGaGCCAGU---C-GUCGAGGcuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 150224 0.66 0.907461
Target:  5'- uGGCCagccaggaGGUCAGCAGacuggCCaGGAAGGa -3'
miRNA:   3'- -CCGGag------CCAGUCGUCga---GGcUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 69464 0.66 0.901308
Target:  5'- uGGCgaccgUGGUguGCAGCUuggCCGAGAcGAa -3'
miRNA:   3'- -CCGga---GCCAguCGUCGA---GGCUCUuCU- -5'
29015 5' -56.9 NC_006146.1 + 39835 0.66 0.901308
Target:  5'- cGGCCUCGGccgCA-CAGUgggCCGGcGggGGc -3'
miRNA:   3'- -CCGGAGCCa--GUcGUCGa--GGCU-CuuCU- -5'
29015 5' -56.9 NC_006146.1 + 99600 0.66 0.901308
Target:  5'- gGGCCgCGGUgcucugcgUAGCAcgaggcguagauGCUCCG-GAGGAa -3'
miRNA:   3'- -CCGGaGCCA--------GUCGU------------CGAGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 155693 0.66 0.901308
Target:  5'- uGGCC-CGGUacuGCGGgUUCGAGguGAa -3'
miRNA:   3'- -CCGGaGCCAgu-CGUCgAGGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 149445 0.66 0.901308
Target:  5'- aGGCCgagagcuugCGG-Cu-CAGCUCCGuGGAGAa -3'
miRNA:   3'- -CCGGa--------GCCaGucGUCGAGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 128301 0.66 0.901308
Target:  5'- aGGCUUCGGUCAGCucuCUcuuucCCGGGcuGGu -3'
miRNA:   3'- -CCGGAGCCAGUCGuc-GA-----GGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 155201 0.66 0.894929
Target:  5'- -uCCUCGGcCAGUGGCcCCGugauGAAGGu -3'
miRNA:   3'- ccGGAGCCaGUCGUCGaGGCu---CUUCU- -5'
29015 5' -56.9 NC_006146.1 + 39670 0.66 0.888327
Target:  5'- uGGCCUUGGaggCGGCGGgCUCCuGGGc-- -3'
miRNA:   3'- -CCGGAGCCa--GUCGUC-GAGGcUCUucu -5'
29015 5' -56.9 NC_006146.1 + 102561 0.66 0.881505
Target:  5'- aGGCgUCcagCAGCAGgUCCGAGccGAg -3'
miRNA:   3'- -CCGgAGccaGUCGUCgAGGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 54798 0.66 0.881505
Target:  5'- cGCCUUGG---GCAGCUCguugGAGAGGAc -3'
miRNA:   3'- cCGGAGCCaguCGUCGAGg---CUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 40319 0.66 0.874469
Target:  5'- gGGCCUCGGU--GgGGUUCaaCGAGAGGu -3'
miRNA:   3'- -CCGGAGCCAguCgUCGAG--GCUCUUCu -5'
29015 5' -56.9 NC_006146.1 + 14836 0.67 0.859769
Target:  5'- cGGUCUCGGgcccggGGCcGCgggaggCCGAGggGGc -3'
miRNA:   3'- -CCGGAGCCag----UCGuCGa-----GGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 120993 0.67 0.855202
Target:  5'- uGGCCUCGG-CGGC--CUCCGAcuaccucuccuaccuGGAGGa -3'
miRNA:   3'- -CCGGAGCCaGUCGucGAGGCU---------------CUUCU- -5'
29015 5' -56.9 NC_006146.1 + 69696 0.67 0.852117
Target:  5'- aGGCUgccaggUGGaUCuuCAGCUCCGAGggGc -3'
miRNA:   3'- -CCGGa-----GCC-AGucGUCGAGGCUCuuCu -5'
29015 5' -56.9 NC_006146.1 + 123309 0.67 0.852117
Target:  5'- gGGUCUcccucaucaCGGUguGCAGCUgCuGGAAGAg -3'
miRNA:   3'- -CCGGA---------GCCAguCGUCGAgGcUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 33201 0.67 0.844271
Target:  5'- gGGCCUcCGGgugCuccuGguGCUCCGGGGc-- -3'
miRNA:   3'- -CCGGA-GCCa--Gu---CguCGAGGCUCUucu -5'
29015 5' -56.9 NC_006146.1 + 12956 0.67 0.844271
Target:  5'- uGGCCUUGG--GGUAGCUCUgGAGucaGAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGG-CUC---UUCU- -5'
29015 5' -56.9 NC_006146.1 + 17765 0.67 0.844271
Target:  5'- aGGCCaCGGUCacacugcgcaagAGCaugagggucccgGGCUCCGAGAGc- -3'
miRNA:   3'- -CCGGaGCCAG------------UCG------------UCGAGGCUCUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.