miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 5' -59.7 NC_006146.1 + 170393 0.67 0.745433
Target:  5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3'
miRNA:   3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5'
29021 5' -59.7 NC_006146.1 + 170365 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 170335 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 169462 0.67 0.745433
Target:  5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3'
miRNA:   3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5'
29021 5' -59.7 NC_006146.1 + 169434 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 169404 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 168530 0.67 0.745433
Target:  5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3'
miRNA:   3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5'
29021 5' -59.7 NC_006146.1 + 168502 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 168472 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 167598 0.67 0.745433
Target:  5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3'
miRNA:   3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5'
29021 5' -59.7 NC_006146.1 + 167570 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 167540 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 166992 0.67 0.745433
Target:  5'- cACGGUaCCCgagaCCuuGGGGGCCUcgucgGUGGGc -3'
miRNA:   3'- -UGCCA-GGG----GGu-CCUCCGGAaa---CACCU- -5'
29021 5' -59.7 NC_006146.1 + 157180 0.69 0.58851
Target:  5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 157066 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5'
29021 5' -59.7 NC_006146.1 + 156800 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 154102 0.69 0.58851
Target:  5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 153988 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5'
29021 5' -59.7 NC_006146.1 + 153722 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 151024 0.69 0.58851
Target:  5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.