Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 110476 | 0.68 | 0.946909 |
Target: 5'- gCCAUGGCCaGGAAGgUGaauagGAACUUg -3' miRNA: 3'- -GGUACCGGcUCUUCgACca---CUUGAAa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 156822 | 0.68 | 0.966257 |
Target: 5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3' miRNA: 3'- ggUACCGGCUCUUCgaCCACUUgaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 153744 | 0.68 | 0.966257 |
Target: 5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3' miRNA: 3'- ggUACCGGCUCUUCgaCCACUUgaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 150667 | 0.68 | 0.966257 |
Target: 5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3' miRNA: 3'- ggUACCGGCUCUUCgaCCACUUgaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 147589 | 0.68 | 0.966257 |
Target: 5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3' miRNA: 3'- ggUACCGGCUCUUCgaCCACUUgaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 144511 | 0.68 | 0.966257 |
Target: 5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3' miRNA: 3'- ggUACCGGCUCUUCgaCCACUUgaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 141433 | 0.68 | 0.966257 |
Target: 5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3' miRNA: 3'- ggUACCGGCUCUUCgaCCACUUgaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 66477 | 0.68 | 0.962859 |
Target: 5'- aCCAUguggGGCaugGGGAGGCUGGUGcuGACg-- -3' miRNA: 3'- -GGUA----CCGg--CUCUUCGACCAC--UUGaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 138802 | 0.68 | 0.955366 |
Target: 5'- uUCGgaugGGCCc-GggGUUGGUGAGCUa- -3' miRNA: 3'- -GGUa---CCGGcuCuuCGACCACUUGAaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 51218 | 0.67 | 0.969429 |
Target: 5'- uCCAcgaGGCCGGGGuGGCgGGUGAGgUUg -3' miRNA: 3'- -GGUa--CCGGCUCU-UCGaCCACUUgAAa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 102381 | 0.67 | 0.969429 |
Target: 5'- cUCcgGGUccuCGGGGAGCUGGUGGuauCUg- -3' miRNA: 3'- -GGuaCCG---GCUCUUCGACCACUu--GAaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 42252 | 0.67 | 0.969429 |
Target: 5'- cCCuccGGCgCGAGGAGCUGGcucagcUGGGCg-- -3' miRNA: 3'- -GGua-CCG-GCUCUUCGACC------ACUUGaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 75275 | 0.66 | 0.985935 |
Target: 5'- -gAUGGCCGAGGAGCcGa-GAGCg-- -3' miRNA: 3'- ggUACCGGCUCUUCGaCcaCUUGaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 116829 | 0.66 | 0.984131 |
Target: 5'- aCGUGuGCCGGGAcgcGGCggccaGGUGGGCc-- -3' miRNA: 3'- gGUAC-CGGCUCU---UCGa----CCACUUGaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 88559 | 0.66 | 0.984131 |
Target: 5'- uCCGUGGugcuccguaacCCGGauauGGAGCUGGUGGggGCUg- -3' miRNA: 3'- -GGUACC-----------GGCU----CUUCGACCACU--UGAaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 24287 | 0.67 | 0.977661 |
Target: 5'- aCCcUGGCCG-GggGCUGGac-GCUg- -3' miRNA: 3'- -GGuACCGGCuCuuCGACCacuUGAaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 121201 | 0.67 | 0.977661 |
Target: 5'- uCCGUGGCCccugGAGAGGgUGGaggaGGACg-- -3' miRNA: 3'- -GGUACCGG----CUCUUCgACCa---CUUGaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 65400 | 0.67 | 0.977661 |
Target: 5'- ---aGGCUGAGAGauauCUGGUGGACg-- -3' miRNA: 3'- gguaCCGGCUCUUc---GACCACUUGaaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 15411 | 0.67 | 0.977661 |
Target: 5'- gCCAggUGGCCucaGAGggGCUGGcccGGCUg- -3' miRNA: 3'- -GGU--ACCGG---CUCuuCGACCac-UUGAaa -5' |
|||||||
29022 | 3' | -51.9 | NC_006146.1 | + | 109188 | 0.67 | 0.973504 |
Target: 5'- uCUGUGGCCGGGGgcauguagGGCaucagagcgcaggugUGGUGGGCUc- -3' miRNA: 3'- -GGUACCGGCUCU--------UCG---------------ACCACUUGAaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home