miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 5' -51.2 NC_006146.1 + 10231 0.66 0.994436
Target:  5'- ---cCUGGUCauguGCCGGCUccUGAaGGCCu -3'
miRNA:   3'- acuuGACCAG----UGGUCGAa-ACUcUCGG- -5'
29022 5' -51.2 NC_006146.1 + 52891 0.77 0.635488
Target:  5'- aGAACUGGUCA-CGGCcgUGAGcuacGGCCg -3'
miRNA:   3'- aCUUGACCAGUgGUCGaaACUC----UCGG- -5'
29022 5' -51.2 NC_006146.1 + 118785 0.73 0.80604
Target:  5'- cGAGCUGGUguCCAGCgacgGGGAacagaugGCCu -3'
miRNA:   3'- aCUUGACCAguGGUCGaaa-CUCU-------CGG- -5'
29022 5' -51.2 NC_006146.1 + 51371 0.72 0.858338
Target:  5'- gGGAUcuUGGUCACCcGCUUcaGAuGAGCCa -3'
miRNA:   3'- aCUUG--ACCAGUGGuCGAAa-CU-CUCGG- -5'
29022 5' -51.2 NC_006146.1 + 10334 0.7 0.926087
Target:  5'- aUGcAGCUcaUCAUCAGCgugcUGAGAGCCg -3'
miRNA:   3'- -AC-UUGAccAGUGGUCGaa--ACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 85546 0.7 0.926087
Target:  5'- cGAACUGGcCACCAcCUUaGAGA-CCa -3'
miRNA:   3'- aCUUGACCaGUGGUcGAAaCUCUcGG- -5'
29022 5' -51.2 NC_006146.1 + 72522 0.7 0.936641
Target:  5'- gGAGCggacGG-CugCGGCUcucgGGGAGCCa -3'
miRNA:   3'- aCUUGa---CCaGugGUCGAaa--CUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 114813 0.69 0.950576
Target:  5'- gGAGCUGGUgGCCgacaccuacuuGGCccggUGGGAcGCCu -3'
miRNA:   3'- aCUUGACCAgUGG-----------UCGaa--ACUCU-CGG- -5'
29022 5' -51.2 NC_006146.1 + 10814 0.69 0.954724
Target:  5'- --cGCUGGgCACCGGCUacacGGGCCa -3'
miRNA:   3'- acuUGACCaGUGGUCGAaacuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 14312 0.69 0.962299
Target:  5'- gGAGCUGGcgCACCuGCUggaGAacucacgcaGGGCCg -3'
miRNA:   3'- aCUUGACCa-GUGGuCGAaa-CU---------CUCGG- -5'
29022 5' -51.2 NC_006146.1 + 65537 0.66 0.992564
Target:  5'- aGAcCUGGUgGcCCAGCaacucAGAGCCu -3'
miRNA:   3'- aCUuGACCAgU-GGUCGaaac-UCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 125791 0.66 0.991457
Target:  5'- -cGGC-GGUCACCGGCc----GAGCCg -3'
miRNA:   3'- acUUGaCCAGUGGUCGaaacuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 125598 0.66 0.991457
Target:  5'- gGAGCUGuUCuCCGGCUUUccaccGAGGGUg -3'
miRNA:   3'- aCUUGACcAGuGGUCGAAA-----CUCUCGg -5'
29022 5' -51.2 NC_006146.1 + 17786 0.66 0.991457
Target:  5'- aGAGCaugagGGUCcCgGGCUccGAGAGCa -3'
miRNA:   3'- aCUUGa----CCAGuGgUCGAaaCUCUCGg -5'
29022 5' -51.2 NC_006146.1 + 85825 0.66 0.988853
Target:  5'- gGAGCUGGU-GCCuuGGCUUUaaaaGAgGAGCUg -3'
miRNA:   3'- aCUUGACCAgUGG--UCGAAA----CU-CUCGG- -5'
29022 5' -51.2 NC_006146.1 + 117014 0.68 0.977281
Target:  5'- cUGGAcCUGGgcuaCGCCcuaacgggGGCgcUGAGGGCCa -3'
miRNA:   3'- -ACUU-GACCa---GUGG--------UCGaaACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 40068 0.69 0.962299
Target:  5'- aGGACaGcGUCucCCGGCg--GAGGGCCu -3'
miRNA:   3'- aCUUGaC-CAGu-GGUCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 126857 0.66 0.994436
Target:  5'- aGGACgcuccaGGUCGaguucCCGGCUUU--GAGCCa -3'
miRNA:   3'- aCUUGa-----CCAGU-----GGUCGAAAcuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 71816 0.74 0.749513
Target:  5'- gGGACUGGUUGCCA-CUgaUGuAGAGCCg -3'
miRNA:   3'- aCUUGACCAGUGGUcGAa-AC-UCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 154593 0.74 0.778864
Target:  5'- gGAAgaGGUCGCCguGGCUg-GAGAGCUc -3'
miRNA:   3'- aCUUgaCCAGUGG--UCGAaaCUCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.