miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29058 5' -62.3 NC_006146.1 + 100852 0.66 0.688043
Target:  5'- gGgUCUgaGGCUCUUauauauagcaCGGCCGUCCCUc -3'
miRNA:   3'- gCgAGAg-CCGAGGA----------GCCGGUAGGGGc -5'
29058 5' -62.3 NC_006146.1 + 118638 0.66 0.688043
Target:  5'- cCGCUgCUugcUGGgUCUcCGGCCGUCUCCa -3'
miRNA:   3'- -GCGA-GA---GCCgAGGaGCCGGUAGGGGc -5'
29058 5' -62.3 NC_006146.1 + 57194 0.66 0.688043
Target:  5'- cCGUcC-CGGCUgCCgccGCCGUCCCCGg -3'
miRNA:   3'- -GCGaGaGCCGA-GGagcCGGUAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 131807 0.66 0.688043
Target:  5'- gCGCUCgcggaaaUGGC-CCU-GGCCuUCCCCa -3'
miRNA:   3'- -GCGAGa------GCCGaGGAgCCGGuAGGGGc -5'
29058 5' -62.3 NC_006146.1 + 123606 0.66 0.687086
Target:  5'- aGCUCUUGGCcagccagcggaggUCCacgCaGCCGUCgCCGg -3'
miRNA:   3'- gCGAGAGCCG-------------AGGa--GcCGGUAGgGGC- -5'
29058 5' -62.3 NC_006146.1 + 120481 0.66 0.678457
Target:  5'- aGCUUgCGGCcugCCU--GCCGUCCCUGg -3'
miRNA:   3'- gCGAGaGCCGa--GGAgcCGGUAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 62537 0.66 0.678457
Target:  5'- --gUCUCGGuCUCCU-GGCCAgcacUCCCUu -3'
miRNA:   3'- gcgAGAGCC-GAGGAgCCGGU----AGGGGc -5'
29058 5' -62.3 NC_006146.1 + 114770 0.66 0.659191
Target:  5'- gGCUCUCGGUcucggggCCcgCGGCCAcCUUCGc -3'
miRNA:   3'- gCGAGAGCCGa------GGa-GCCGGUaGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 103883 0.66 0.659191
Target:  5'- gGCUCccggacacgCGGCUCacccgGGCCAUCUCCu -3'
miRNA:   3'- gCGAGa--------GCCGAGgag--CCGGUAGGGGc -5'
29058 5' -62.3 NC_006146.1 + 10239 0.66 0.659191
Target:  5'- uGUgC-CGGCUCCUgaaGGCC-UCCCUGa -3'
miRNA:   3'- gCGaGaGCCGAGGAg--CCGGuAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 113889 0.66 0.659191
Target:  5'- cCGCcacCUC--CUCCUCGGCCAUggCCCCc -3'
miRNA:   3'- -GCGa--GAGccGAGGAGCCGGUA--GGGGc -5'
29058 5' -62.3 NC_006146.1 + 103754 0.66 0.657259
Target:  5'- gCGCUCaggagcggccagCGGCUCC-CGGUCuUCCUCu -3'
miRNA:   3'- -GCGAGa-----------GCCGAGGaGCCGGuAGGGGc -5'
29058 5' -62.3 NC_006146.1 + 115905 0.67 0.639846
Target:  5'- cCGCcCggggGGCUUC-CGGCCA-CCCCGg -3'
miRNA:   3'- -GCGaGag--CCGAGGaGCCGGUaGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 117870 0.67 0.639846
Target:  5'- -cCUCUCGGCggcggCCgCGGCCAgCCgCGu -3'
miRNA:   3'- gcGAGAGCCGa----GGaGCCGGUaGGgGC- -5'
29058 5' -62.3 NC_006146.1 + 137687 0.67 0.62048
Target:  5'- aGCcccaUCcCGGCUCCcccucCGGCCuccCCCCGg -3'
miRNA:   3'- gCG----AGaGCCGAGGa----GCCGGua-GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 150618 0.67 0.610805
Target:  5'- gGCgaUCUUGGCgaUCUCGGCCAcCUCCa -3'
miRNA:   3'- gCG--AGAGCCGa-GGAGCCGGUaGGGGc -5'
29058 5' -62.3 NC_006146.1 + 3641 0.67 0.610805
Target:  5'- aCGCg--CGGCcCCg-GGCCcUCCCCGa -3'
miRNA:   3'- -GCGagaGCCGaGGagCCGGuAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 845 0.67 0.610805
Target:  5'- aCGCg--CGGCcCCg-GGCCcUCCCCGa -3'
miRNA:   3'- -GCGagaGCCGaGGagCCGGuAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 1777 0.67 0.610805
Target:  5'- aCGCg--CGGCcCCg-GGCCcUCCCCGa -3'
miRNA:   3'- -GCGagaGCCGaGGagCCGGuAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 2709 0.67 0.610805
Target:  5'- aCGCg--CGGCcCCg-GGCCcUCCCCGa -3'
miRNA:   3'- -GCGagaGCCGaGGagCCGGuAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.