miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 3' -64 NC_006146.1 + 96659 1.07 0.000742
Target:  5'- cGGGGAGACGGCCGCGCAGGGCCUGAAg -3'
miRNA:   3'- -CCCCUCUGCCGGCGCGUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 154967 0.79 0.086642
Target:  5'- aGGGAGACGGUcagcacggccuCGCGCAGGGCCcGGc -3'
miRNA:   3'- cCCCUCUGCCG-----------GCGCGUCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 137033 0.78 0.098246
Target:  5'- cGGGGAGGaGGCCGgGUGGGGgCCUGGGg -3'
miRNA:   3'- -CCCCUCUgCCGGCgCGUCCC-GGACUU- -5'
29061 3' -64 NC_006146.1 + 14207 0.78 0.108571
Target:  5'- cGGGGAGGCGGUggCGCGCAacgcGGGCCUu-- -3'
miRNA:   3'- -CCCCUCUGCCG--GCGCGU----CCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 55052 0.76 0.142429
Target:  5'- cGGGGccugccacAGGCGGCCGUaucggacccacaGCAGGGaCCUGAGg -3'
miRNA:   3'- -CCCC--------UCUGCCGGCG------------CGUCCC-GGACUU- -5'
29061 3' -64 NC_006146.1 + 161749 0.76 0.148816
Target:  5'- gGGGGuGGCGGCUgagguccgaggggGCGCcugggcgGGGGCCUGAAu -3'
miRNA:   3'- -CCCCuCUGCCGG-------------CGCG-------UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 77918 0.75 0.164745
Target:  5'- aGGGGcGGGCGGCCuCGCAGGuGCCgGGGg -3'
miRNA:   3'- -CCCC-UCUGCCGGcGCGUCC-CGGaCUU- -5'
29061 3' -64 NC_006146.1 + 137220 0.75 0.168757
Target:  5'- cGGGGAGGaaGCCGgGUGGGGgCCUGGGg -3'
miRNA:   3'- -CCCCUCUgcCGGCgCGUCCC-GGACUU- -5'
29061 3' -64 NC_006146.1 + 118235 0.75 0.177045
Target:  5'- cGGaGAGGCGGCUGCGCacguacugGGGGCCaGAGc -3'
miRNA:   3'- cCC-CUCUGCCGGCGCG--------UCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 128186 0.75 0.178745
Target:  5'- cGGGAGGCGGCCcaggggggcgccgcgGCGCcGGGCCaGAc -3'
miRNA:   3'- cCCCUCUGCCGG---------------CGCGuCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 146228 0.73 0.234686
Target:  5'- uGGaGGACGGggaCGCGgAGGGCCUGAGg -3'
miRNA:   3'- cCCcUCUGCCg--GCGCgUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 158541 0.73 0.234686
Target:  5'- uGGaGGACGGggaCGCGgAGGGCCUGAGg -3'
miRNA:   3'- cCCcUCUGCCg--GCGCgUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 149306 0.73 0.234686
Target:  5'- uGGaGGACGGggaCGCGgAGGGCCUGAGg -3'
miRNA:   3'- cCCcUCUGCCg--GCGCgUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 155462 0.73 0.234686
Target:  5'- uGGaGGACGGggaCGCGgAGGGCCUGAGg -3'
miRNA:   3'- cCCcUCUGCCg--GCGCgUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 143150 0.73 0.234686
Target:  5'- uGGaGGACGGggaCGCGgAGGGCCUGAGg -3'
miRNA:   3'- cCCcUCUGCCg--GCGCgUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 152384 0.73 0.234686
Target:  5'- uGGaGGACGGggaCGCGgAGGGCCUGAGg -3'
miRNA:   3'- cCCcUCUGCCg--GCGCgUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 155706 0.73 0.234687
Target:  5'- cGGGuucgaggugaAGGCGGCCGCGCAGucGGCCUu-- -3'
miRNA:   3'- cCCC----------UCUGCCGGCGCGUC--CCGGAcuu -5'
29061 3' -64 NC_006146.1 + 3365 0.72 0.239592
Target:  5'- gGGGGAGAaaaucaaCGGCCGCGgcguccuaCAGGcCCUGAAg -3'
miRNA:   3'- -CCCCUCU-------GCCGGCGC--------GUCCcGGACUU- -5'
29061 3' -64 NC_006146.1 + 123694 0.72 0.251371
Target:  5'- uGGcGGAGGCGGCCa---GGGGCCUGGc -3'
miRNA:   3'- -CC-CCUCUGCCGGcgcgUCCCGGACUu -5'
29061 3' -64 NC_006146.1 + 137960 0.72 0.251371
Target:  5'- gGGGGAGgaucGCGGCCGgGCcucccgGGGGCCcGGc -3'
miRNA:   3'- -CCCCUC----UGCCGGCgCG------UCCCGGaCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.