miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 3' -64 NC_006146.1 + 3365 0.72 0.239592
Target:  5'- gGGGGAGAaaaucaaCGGCCGCGgcguccuaCAGGcCCUGAAg -3'
miRNA:   3'- -CCCCUCU-------GCCGGCGC--------GUCCcGGACUU- -5'
29061 3' -64 NC_006146.1 + 10884 0.68 0.46338
Target:  5'- uGGGGAGACaGCgggGCGguGGGCaaugcgccaccaCUGAAa -3'
miRNA:   3'- -CCCCUCUGcCGg--CGCguCCCG------------GACUU- -5'
29061 3' -64 NC_006146.1 + 13331 0.67 0.507576
Target:  5'- cGGuGGAGuCGGCCGCggccuacGCGGaGGCCa--- -3'
miRNA:   3'- -CC-CCUCuGCCGGCG-------CGUC-CCGGacuu -5'
29061 3' -64 NC_006146.1 + 14207 0.78 0.108571
Target:  5'- cGGGGAGGCGGUggCGCGCAacgcGGGCCUu-- -3'
miRNA:   3'- -CCCCUCUGCCG--GCGCGU----CCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 14800 0.67 0.47224
Target:  5'- aGGGGaAGGagaGGCCG-GCcGGGCCgGAGg -3'
miRNA:   3'- -CCCC-UCUg--CCGGCgCGuCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 24108 0.67 0.499317
Target:  5'- cGGGucgaGGGCGGCUG-GCAccGGGCCUGu- -3'
miRNA:   3'- cCCC----UCUGCCGGCgCGU--CCCGGACuu -5'
29061 3' -64 NC_006146.1 + 26048 0.67 0.499317
Target:  5'- gGGGGAGAgccgcugcaauUGGcCCGcCGCAacguGGGCCgGAAa -3'
miRNA:   3'- -CCCCUCU-----------GCC-GGC-GCGU----CCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 32940 0.67 0.484787
Target:  5'- cGGGAGGCccGGCCGCGauccucccccgugaaCGGGGCgcgCUGGGu -3'
miRNA:   3'- cCCCUCUG--CCGGCGC---------------GUCCCG---GACUU- -5'
29061 3' -64 NC_006146.1 + 33020 0.66 0.536441
Target:  5'- cGGGGAcccccuGcCGGCCcgGgGCGGGGCCcgGGAc -3'
miRNA:   3'- -CCCCU------CuGCCGG--CgCGUCCCGGa-CUU- -5'
29061 3' -64 NC_006146.1 + 34026 0.7 0.357031
Target:  5'- cGGGGcAGGCGGgCGUGguccCGGGGCCUa-- -3'
miRNA:   3'- -CCCC-UCUGCCgGCGC----GUCCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 34234 0.69 0.380012
Target:  5'- gGGGGGGA-GGCCGcCGCAaggacgccGGGCCg--- -3'
miRNA:   3'- -CCCCUCUgCCGGC-GCGU--------CCCGGacuu -5'
29061 3' -64 NC_006146.1 + 39536 0.68 0.437337
Target:  5'- uGGGGGA-GGCgGCGCaAGGGCUgGAu -3'
miRNA:   3'- cCCCUCUgCCGgCGCG-UCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 39676 0.67 0.517747
Target:  5'- -uGGAGGCGGCgG-GCuccuGGGCCUGc- -3'
miRNA:   3'- ccCCUCUGCCGgCgCGu---CCCGGACuu -5'
29061 3' -64 NC_006146.1 + 39876 0.69 0.369932
Target:  5'- gGGGGAGgaggcugaggcugaGCGGCC-UGCGGGGCggGAAa -3'
miRNA:   3'- -CCCCUC--------------UGCCGGcGCGUCCCGgaCUU- -5'
29061 3' -64 NC_006146.1 + 41099 0.72 0.257145
Target:  5'- aGGGGAGcCaGgCGUGCAGGGCCUc-- -3'
miRNA:   3'- -CCCCUCuGcCgGCGCGUCCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 41610 0.66 0.5649
Target:  5'- cGGGGGGcUGGUC-CGCuGGGCCcGGg -3'
miRNA:   3'- -CCCCUCuGCCGGcGCGuCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 42626 0.67 0.527063
Target:  5'- uGGGGcu-CGGCCGcCGCcguGGGCCUc-- -3'
miRNA:   3'- -CCCCucuGCCGGC-GCGu--CCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 43628 0.68 0.428844
Target:  5'- aGGGAGugGG-CG-GCGGGGCgUGGc -3'
miRNA:   3'- cCCCUCugCCgGCgCGUCCCGgACUu -5'
29061 3' -64 NC_006146.1 + 44022 0.67 0.481186
Target:  5'- cGGGGAGGgGGCgGCcgAGGGCCc--- -3'
miRNA:   3'- -CCCCUCUgCCGgCGcgUCCCGGacuu -5'
29061 3' -64 NC_006146.1 + 44769 0.68 0.437337
Target:  5'- gGGGGAGAgGguGCCGUGCcGGGCUcagGGGg -3'
miRNA:   3'- -CCCCUCUgC--CGGCGCGuCCCGGa--CUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.