miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 3' -64 NC_006146.1 + 46055 0.66 0.552513
Target:  5'- -aGGGGACGcagcgagugccauaGCUGCuGCAGGGCCUcGGGg -3'
miRNA:   3'- ccCCUCUGC--------------CGGCG-CGUCCCGGA-CUU- -5'
29061 3' -64 NC_006146.1 + 46437 0.67 0.517747
Target:  5'- aGGGGgcccccaggaAGGCGGCgGCGUA-GGCCgGAu -3'
miRNA:   3'- -CCCC----------UCUGCCGgCGCGUcCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 51573 0.69 0.372242
Target:  5'- uGGGGAGGCGGCgCG-GCcgaaggGGGGaCUGAGg -3'
miRNA:   3'- -CCCCUCUGCCG-GCgCG------UCCCgGACUU- -5'
29061 3' -64 NC_006146.1 + 51680 0.68 0.454608
Target:  5'- aGGGGGGCGaCgGgGCGGGGgCUGAu -3'
miRNA:   3'- cCCCUCUGCcGgCgCGUCCCgGACUu -5'
29061 3' -64 NC_006146.1 + 51733 0.67 0.508497
Target:  5'- uGGGGAGGCGGCgcccCGaGguGGGCUUc-- -3'
miRNA:   3'- -CCCCUCUGCCG----GCgCguCCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 51888 0.72 0.263029
Target:  5'- aGGGGAGGguggaGGCUGCGUcggcgGGGGCCUccGAGg -3'
miRNA:   3'- -CCCCUCUg----CCGGCGCG-----UCCCGGA--CUU- -5'
29061 3' -64 NC_006146.1 + 53334 0.7 0.364582
Target:  5'- aGGaGGcccGGCGGCCGCGgGGcGGCgUGAGg -3'
miRNA:   3'- -CC-CCu--CUGCCGGCGCgUC-CCGgACUU- -5'
29061 3' -64 NC_006146.1 + 53734 0.7 0.342261
Target:  5'- cGGGAGccGCGGCUGCGCcGGGGCg---- -3'
miRNA:   3'- cCCCUC--UGCCGGCGCG-UCCCGgacuu -5'
29061 3' -64 NC_006146.1 + 54598 0.68 0.428844
Target:  5'- uGGGGAGA-GGaCCGCGgGGGcGCCa--- -3'
miRNA:   3'- -CCCCUCUgCC-GGCGCgUCC-CGGacuu -5'
29061 3' -64 NC_006146.1 + 54764 0.71 0.294089
Target:  5'- -aGGAGACcaGCCaGCGCAGGGCCgccagGGAg -3'
miRNA:   3'- ccCCUCUGc-CGG-CGCGUCCCGGa----CUU- -5'
29061 3' -64 NC_006146.1 + 55052 0.76 0.142429
Target:  5'- cGGGGccugccacAGGCGGCCGUaucggacccacaGCAGGGaCCUGAGg -3'
miRNA:   3'- -CCCC--------UCUGCCGGCG------------CGUCCC-GGACUU- -5'
29061 3' -64 NC_006146.1 + 57365 0.66 0.5649
Target:  5'- aGGGAGGCuGCgGCGguGGcGCCg--- -3'
miRNA:   3'- cCCCUCUGcCGgCGCguCC-CGGacuu -5'
29061 3' -64 NC_006146.1 + 60788 0.67 0.508497
Target:  5'- uGGGAGcCGGaCCagGUcCAGGGCCUGGu -3'
miRNA:   3'- cCCCUCuGCC-GG--CGcGUCCCGGACUu -5'
29061 3' -64 NC_006146.1 + 71875 0.67 0.505735
Target:  5'- uGGGGGGccucuacACGGCCGUcacgcggacccuccuGCGcgcggccucugaccuGGGCCUGAc -3'
miRNA:   3'- -CCCCUC-------UGCCGGCG---------------CGU---------------CCCGGACUu -5'
29061 3' -64 NC_006146.1 + 75703 0.66 0.5649
Target:  5'- uGGaGGAG-CuGCaGCGCAGGGaCCUGGc -3'
miRNA:   3'- -CC-CCUCuGcCGgCGCGUCCC-GGACUu -5'
29061 3' -64 NC_006146.1 + 76859 0.67 0.490213
Target:  5'- aGGGAuacGCGGCgGCGCucGGGGCCg--- -3'
miRNA:   3'- cCCCUc--UGCCGgCGCG--UCCCGGacuu -5'
29061 3' -64 NC_006146.1 + 77918 0.75 0.164745
Target:  5'- aGGGGcGGGCGGCCuCGCAGGuGCCgGGGg -3'
miRNA:   3'- -CCCC-UCUGCCGGcGCGUCC-CGGaCUU- -5'
29061 3' -64 NC_006146.1 + 78013 0.67 0.499317
Target:  5'- cGGGGGGuggUGGCCuaGCAGGuaCCUGGg -3'
miRNA:   3'- -CCCCUCu--GCCGGcgCGUCCc-GGACUu -5'
29061 3' -64 NC_006146.1 + 85902 0.68 0.445926
Target:  5'- aGGGuGAGAgaGCCGCGgggcuuuacccUGGGGCCUGGAu -3'
miRNA:   3'- -CCC-CUCUgcCGGCGC-----------GUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 96659 1.07 0.000742
Target:  5'- cGGGGAGACGGCCGCGCAGGGCCUGAAg -3'
miRNA:   3'- -CCCCUCUGCCGGCGCGUCCCGGACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.