miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 3' -64 NC_006146.1 + 170496 0.69 0.39107
Target:  5'- gGGGGcuuccccggacccccAGcgcGCGGCgG-GCGGGGCCUGAGg -3'
miRNA:   3'- -CCCC---------------UC---UGCCGgCgCGUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 51573 0.69 0.372242
Target:  5'- uGGGGAGGCGGCgCG-GCcgaaggGGGGaCUGAGg -3'
miRNA:   3'- -CCCCUCUGCCG-GCgCG------UCCCgGACUU- -5'
29061 3' -64 NC_006146.1 + 97851 0.71 0.294089
Target:  5'- uGGaGGAGGgGGCCGCcgaccccggGCcguggaacgAGGGCCUGAGc -3'
miRNA:   3'- -CC-CCUCUgCCGGCG---------CG---------UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 118235 0.75 0.177045
Target:  5'- cGGaGAGGCGGCUGCGCacguacugGGGGCCaGAGc -3'
miRNA:   3'- cCC-CUCUGCCGGCGCG--------UCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 167625 0.68 0.437337
Target:  5'- cGGaGGGGGgGGUCcCGCGGGGCCcGGc -3'
miRNA:   3'- -CC-CCUCUgCCGGcGCGUCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 170182 0.69 0.403962
Target:  5'- aGGGGGcucccGAgGGCgGgGcCGGGGCCUGGc -3'
miRNA:   3'- -CCCCU-----CUgCCGgCgC-GUCCCGGACUu -5'
29061 3' -64 NC_006146.1 + 34026 0.7 0.357031
Target:  5'- cGGGGcAGGCGGgCGUGguccCGGGGCCUa-- -3'
miRNA:   3'- -CCCC-UCUGCCgGCGC----GUCCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 55052 0.76 0.142429
Target:  5'- cGGGGccugccacAGGCGGCCGUaucggacccacaGCAGGGaCCUGAGg -3'
miRNA:   3'- -CCCC--------UCUGCCGGCG------------CGUCCC-GGACUU- -5'
29061 3' -64 NC_006146.1 + 169251 0.69 0.403962
Target:  5'- aGGGGGcucccGAgGGCgGgGcCGGGGCCUGGc -3'
miRNA:   3'- -CCCCU-----CUgCCGgCgC-GUCCCGGACUu -5'
29061 3' -64 NC_006146.1 + 154967 0.79 0.086642
Target:  5'- aGGGAGACGGUcagcacggccuCGCGCAGGGCCcGGc -3'
miRNA:   3'- cCCCUCUGCCG-----------GCGCGUCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 53334 0.7 0.364582
Target:  5'- aGGaGGcccGGCGGCCGCGgGGcGGCgUGAGg -3'
miRNA:   3'- -CC-CCu--CUGCCGGCGCgUC-CCGgACUU- -5'
29061 3' -64 NC_006146.1 + 99018 0.69 0.403962
Target:  5'- aGGGuccgcguGACGGCCGUGUAGaGGCCc--- -3'
miRNA:   3'- cCCCu------CUGCCGGCGCGUC-CCGGacuu -5'
29061 3' -64 NC_006146.1 + 167698 0.7 0.335043
Target:  5'- cGGGGGGCuuccccggGGCCcgaGCGCgcgucggguGGGGCCUGAGg -3'
miRNA:   3'- cCCCUCUG--------CCGG---CGCG---------UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 130312 0.71 0.294089
Target:  5'- -cGGAGGuuCGGCCGCcCAGGGCCaGGAc -3'
miRNA:   3'- ccCCUCU--GCCGGCGcGUCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 137960 0.72 0.251371
Target:  5'- gGGGGAGgaucGCGGCCGgGCcucccgGGGGCCcGGc -3'
miRNA:   3'- -CCCCUC----UGCCGGCgCG------UCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 128186 0.75 0.178745
Target:  5'- cGGGAGGCGGCCcaggggggcgccgcgGCGCcGGGCCaGAc -3'
miRNA:   3'- cCCCUCUGCCGG---------------CGCGuCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 85902 0.68 0.445926
Target:  5'- aGGGuGAGAgaGCCGCGgggcuuuacccUGGGGCCUGGAu -3'
miRNA:   3'- -CCC-CUCUgcCGGCGC-----------GUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 168557 0.68 0.437337
Target:  5'- cGGaGGGGGgGGUCcCGCGGGGCCcGGc -3'
miRNA:   3'- -CC-CCUCUgCCGGcGCGUCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 169977 0.68 0.420449
Target:  5'- cGGGAGGcCGGCgCGCGCccGGGGUCccgGGGg -3'
miRNA:   3'- cCCCUCU-GCCG-GCGCG--UCCCGGa--CUU- -5'
29061 3' -64 NC_006146.1 + 167181 0.68 0.420449
Target:  5'- cGGGAGGcCGGCgCGCGCccGGGGUCccgGGGg -3'
miRNA:   3'- cCCCUCU-GCCG-GCGCG--UCCCGGa--CUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.