miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 3' -64 NC_006146.1 + 96659 1.07 0.000742
Target:  5'- cGGGGAGACGGCCGCGCAGGGCCUGAAg -3'
miRNA:   3'- -CCCCUCUGCCGGCGCGUCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 34026 0.7 0.357031
Target:  5'- cGGGGcAGGCGGgCGUGguccCGGGGCCUa-- -3'
miRNA:   3'- -CCCC-UCUGCCgGCGC----GUCCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 51573 0.69 0.372242
Target:  5'- uGGGGAGGCGGCgCG-GCcgaaggGGGGaCUGAGg -3'
miRNA:   3'- -CCCCUCUGCCG-GCgCG------UCCCgGACUU- -5'
29061 3' -64 NC_006146.1 + 96825 0.66 0.574478
Target:  5'- uGGuGGGGACGGgCGgGCAgguuGGGCCc--- -3'
miRNA:   3'- -CC-CCUCUGCCgGCgCGU----CCCGGacuu -5'
29061 3' -64 NC_006146.1 + 128186 0.75 0.178745
Target:  5'- cGGGAGGCGGCCcaggggggcgccgcgGCGCcGGGCCaGAc -3'
miRNA:   3'- cCCCUCUGCCGG---------------CGCGuCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 155706 0.73 0.234687
Target:  5'- cGGGuucgaggugaAGGCGGCCGCGCAGucGGCCUu-- -3'
miRNA:   3'- cCCC----------UCUGCCGGCGCGUC--CCGGAcuu -5'
29061 3' -64 NC_006146.1 + 137960 0.72 0.251371
Target:  5'- gGGGGAGgaucGCGGCCGgGCcucccgGGGGCCcGGc -3'
miRNA:   3'- -CCCCUC----UGCCGGCgCG------UCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 51888 0.72 0.263029
Target:  5'- aGGGGAGGguggaGGCUGCGUcggcgGGGGCCUccGAGg -3'
miRNA:   3'- -CCCCUCUg----CCGGCGCG-----UCCCGGA--CUU- -5'
29061 3' -64 NC_006146.1 + 130312 0.71 0.294089
Target:  5'- -cGGAGGuuCGGCCGCcCAGGGCCaGGAc -3'
miRNA:   3'- ccCCUCU--GCCGGCGcGUCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 53734 0.7 0.342261
Target:  5'- cGGGAGccGCGGCUGCGCcGGGGCg---- -3'
miRNA:   3'- cCCCUC--UGCCGGCGCG-UCCCGgacuu -5'
29061 3' -64 NC_006146.1 + 168631 0.7 0.327937
Target:  5'- cGGGGGGCuuccccggGGCCcgaGCGCgcgucgguGGGGCCUGAGg -3'
miRNA:   3'- cCCCUCUG--------CCGG---CGCG--------UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 97851 0.71 0.294089
Target:  5'- uGGaGGAGGgGGCCGCcgaccccggGCcguggaacgAGGGCCUGAGc -3'
miRNA:   3'- -CC-CCUCUgCCGGCG---------CG---------UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 154967 0.79 0.086642
Target:  5'- aGGGAGACGGUcagcacggccuCGCGCAGGGCCcGGc -3'
miRNA:   3'- cCCCUCUGCCG-----------GCGCGUCCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 167698 0.7 0.335043
Target:  5'- cGGGGGGCuuccccggGGCCcgaGCGCgcgucggguGGGGCCUGAGg -3'
miRNA:   3'- cCCCUCUG--------CCGG---CGCG---------UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 55052 0.76 0.142429
Target:  5'- cGGGGccugccacAGGCGGCCGUaucggacccacaGCAGGGaCCUGAGg -3'
miRNA:   3'- -CCCC--------UCUGCCGGCG------------CGUCCC-GGACUU- -5'
29061 3' -64 NC_006146.1 + 54764 0.71 0.294089
Target:  5'- -aGGAGACcaGCCaGCGCAGGGCCgccagGGAg -3'
miRNA:   3'- ccCCUCUGc-CGG-CGCGUCCCGGa----CUU- -5'
29061 3' -64 NC_006146.1 + 169563 0.7 0.335043
Target:  5'- cGGGGGGCuuccccggGGCCcgaGCGCgcgucggguGGGGCCUGAGg -3'
miRNA:   3'- cCCCUCUG--------CCGG---CGCG---------UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 53334 0.7 0.364582
Target:  5'- aGGaGGcccGGCGGCCGCGgGGcGGCgUGAGg -3'
miRNA:   3'- -CC-CCu--CUGCCGGCGCgUC-CCGgACUU- -5'
29061 3' -64 NC_006146.1 + 118235 0.75 0.177045
Target:  5'- cGGaGAGGCGGCUGCGCacguacugGGGGCCaGAGc -3'
miRNA:   3'- cCC-CUCUGCCGGCGCG--------UCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 3365 0.72 0.239592
Target:  5'- gGGGGAGAaaaucaaCGGCCGCGgcguccuaCAGGcCCUGAAg -3'
miRNA:   3'- -CCCCUCU-------GCCGGCGC--------GUCCcGGACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.