miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 3' -64 NC_006146.1 + 148602 0.72 0.257145
Target:  5'- gGGGGAcugagGGCGGCCGCcuuGGGGCCcGGAg -3'
miRNA:   3'- -CCCCU-----CUGCCGGCGcg-UCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 41099 0.72 0.257145
Target:  5'- aGGGGAGcCaGgCGUGCAGGGCCUc-- -3'
miRNA:   3'- -CCCCUCuGcCgGCGCGUCCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 142446 0.72 0.257145
Target:  5'- gGGGGAcugagGGCGGCCGCcuuGGGGCCcGGAg -3'
miRNA:   3'- -CCCCU-----CUGCCGGCGcg-UCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 145524 0.72 0.257145
Target:  5'- gGGGGAcugagGGCGGCCGCcuuGGGGCCcGGAg -3'
miRNA:   3'- -CCCCU-----CUGCCGGCGcg-UCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 154757 0.72 0.257145
Target:  5'- gGGGGAcugagGGCGGCCGCcuuGGGGCCcGGAg -3'
miRNA:   3'- -CCCCU-----CUGCCGGCGcg-UCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 157835 0.72 0.257145
Target:  5'- gGGGGAcugagGGCGGCCGCcuuGGGGCCcGGAg -3'
miRNA:   3'- -CCCCU-----CUGCCGGCGcg-UCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 51888 0.72 0.263029
Target:  5'- aGGGGAGGguggaGGCUGCGUcggcgGGGGCCUccGAGg -3'
miRNA:   3'- -CCCCUCUg----CCGGCGCG-----UCCCGGA--CUU- -5'
29061 3' -64 NC_006146.1 + 121813 0.72 0.27328
Target:  5'- aGGGAGACGGCCGCuGCGgugaaucugcucccGGGUCUc-- -3'
miRNA:   3'- cCCCUCUGCCGGCG-CGU--------------CCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 151680 0.71 0.281333
Target:  5'- gGGGGAcuGAgGGCgGCGCcuuGGGGCCcGGAg -3'
miRNA:   3'- -CCCCU--CUgCCGgCGCG---UCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 141707 0.71 0.281333
Target:  5'- uGGGGAGACaGCUGaGgGGGGCCgggGAGg -3'
miRNA:   3'- -CCCCUCUGcCGGCgCgUCCCGGa--CUU- -5'
29061 3' -64 NC_006146.1 + 54764 0.71 0.294089
Target:  5'- -aGGAGACcaGCCaGCGCAGGGCCgccagGGAg -3'
miRNA:   3'- ccCCUCUGc-CGG-CGCGUCCCGGa----CUU- -5'
29061 3' -64 NC_006146.1 + 130312 0.71 0.294089
Target:  5'- -cGGAGGuuCGGCCGCcCAGGGCCaGGAc -3'
miRNA:   3'- ccCCUCU--GCCGGCGcGUCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 97851 0.71 0.294089
Target:  5'- uGGaGGAGGgGGCCGCcgaccccggGCcguggaacgAGGGCCUGAGc -3'
miRNA:   3'- -CC-CCUCUgCCGGCG---------CG---------UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 150683 0.71 0.307292
Target:  5'- uGGGGAG-UGGCCagggggaCGgAGGGCCUGGc -3'
miRNA:   3'- -CCCCUCuGCCGGc------GCgUCCCGGACUu -5'
29061 3' -64 NC_006146.1 + 105949 0.71 0.314062
Target:  5'- uGGGAGugGGCCaauauuUGCAaGGCCUGAc -3'
miRNA:   3'- cCCCUCugCCGGc-----GCGUcCCGGACUu -5'
29061 3' -64 NC_006146.1 + 168631 0.7 0.327937
Target:  5'- cGGGGGGCuuccccggGGCCcgaGCGCgcgucgguGGGGCCUGAGg -3'
miRNA:   3'- cCCCUCUG--------CCGG---CGCG--------UCCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 153760 0.7 0.335043
Target:  5'- uGGGGAG-UGGCCagggaggaCGgAGGGCCUGGc -3'
miRNA:   3'- -CCCCUCuGCCGGc-------GCgUCCCGGACUu -5'
29061 3' -64 NC_006146.1 + 144527 0.7 0.335043
Target:  5'- uGGGGAG-UGGCCagggaggaCGgAGGGCCUGGc -3'
miRNA:   3'- -CCCCUCuGCCGGc-------GCgUCCCGGACUu -5'
29061 3' -64 NC_006146.1 + 141449 0.7 0.335043
Target:  5'- uGGGGAG-UGGCCagggaggaCGgAGGGCCUGGc -3'
miRNA:   3'- -CCCCUCuGCCGGc-------GCgUCCCGGACUu -5'
29061 3' -64 NC_006146.1 + 147605 0.7 0.335043
Target:  5'- uGGGGAG-UGGCCagggaggaCGgAGGGCCUGGc -3'
miRNA:   3'- -CCCCUCuGCCGGc-------GCgUCCCGGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.