miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 3' -64 NC_006146.1 + 113649 0.67 0.527063
Target:  5'- cGGGGGAUGGCCuuGCugaccacGGGCCcgUGGAc -3'
miRNA:   3'- cCCCUCUGCCGGcgCGu------CCCGG--ACUU- -5'
29061 3' -64 NC_006146.1 + 126014 0.67 0.527063
Target:  5'- gGGGGcGGugGGCUucuGCuGCuGGGCCgGGAg -3'
miRNA:   3'- -CCCC-UCugCCGG---CG-CGuCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 132407 0.67 0.527063
Target:  5'- gGGGGAugGugGGCCagacaCGguGGGUgUGGAa -3'
miRNA:   3'- -CCCCU--CugCCGGc----GCguCCCGgACUU- -5'
29061 3' -64 NC_006146.1 + 42626 0.67 0.527063
Target:  5'- uGGGGcu-CGGCCGcCGCcguGGGCCUc-- -3'
miRNA:   3'- -CCCCucuGCCGGC-GCGu--CCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 154654 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 149969 0.67 0.517747
Target:  5'- uGGGAGugGGg-GC-CAGGGCCUGc- -3'
miRNA:   3'- cCCCUCugCCggCGcGUCCCGGACuu -5'
29061 3' -64 NC_006146.1 + 46437 0.67 0.517747
Target:  5'- aGGGGgcccccaggaAGGCGGCgGCGUA-GGCCgGAu -3'
miRNA:   3'- -CCCC----------UCUGCCGgCGCGUcCCGGaCUu -5'
29061 3' -64 NC_006146.1 + 142342 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 39676 0.67 0.517747
Target:  5'- -uGGAGGCGGCgG-GCuccuGGGCCUGc- -3'
miRNA:   3'- ccCCUCUGCCGgCgCGu---CCCGGACuu -5'
29061 3' -64 NC_006146.1 + 158379 0.67 0.517747
Target:  5'- cGGGGcAGGCgGGCUGCGCgaAGGGgUUGc- -3'
miRNA:   3'- -CCCC-UCUG-CCGGCGCG--UCCCgGACuu -5'
29061 3' -64 NC_006146.1 + 145420 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 148498 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 151576 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 157731 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 101826 0.67 0.508497
Target:  5'- aGGGGAGGCGGaaauuggaGCAGGGUUgggGAAa -3'
miRNA:   3'- -CCCCUCUGCCggcg----CGUCCCGGa--CUU- -5'
29061 3' -64 NC_006146.1 + 166872 0.67 0.508497
Target:  5'- cGGGAGGgGGgaGCGgAGGGCgaGGAg -3'
miRNA:   3'- cCCCUCUgCCggCGCgUCCCGgaCUU- -5'
29061 3' -64 NC_006146.1 + 60788 0.67 0.508497
Target:  5'- uGGGAGcCGGaCCagGUcCAGGGCCUGGu -3'
miRNA:   3'- cCCCUCuGCC-GG--CGcGUCCCGGACUu -5'
29061 3' -64 NC_006146.1 + 51733 0.67 0.508497
Target:  5'- uGGGGAGGCGGCgcccCGaGguGGGCUUc-- -3'
miRNA:   3'- -CCCCUCUGCCG----GCgCguCCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 149831 0.67 0.508497
Target:  5'- gGGuGGuGugGGCgGC-CAGGGCCUcGGc -3'
miRNA:   3'- -CC-CCuCugCCGgCGcGUCCCGGA-CUu -5'
29061 3' -64 NC_006146.1 + 13331 0.67 0.507576
Target:  5'- cGGuGGAGuCGGCCGCggccuacGCGGaGGCCa--- -3'
miRNA:   3'- -CC-CCUCuGCCGGCG-------CGUC-CCGGacuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.