miRNA display CGI


Results 21 - 40 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 3' -64 NC_006146.1 + 157096 0.67 0.490213
Target:  5'- uGGGGAGACaaGCUGaGgGGGGCCgggGAGg -3'
miRNA:   3'- -CCCCUCUGc-CGGCgCgUCCCGGa--CUU- -5'
29061 3' -64 NC_006146.1 + 154018 0.67 0.490213
Target:  5'- uGGGGAGACaaGCUGaGgGGGGCCgggGAGg -3'
miRNA:   3'- -CCCCUCUGc-CGGCgCgUCCCGGa--CUU- -5'
29061 3' -64 NC_006146.1 + 60788 0.67 0.508497
Target:  5'- uGGGAGcCGGaCCagGUcCAGGGCCUGGu -3'
miRNA:   3'- cCCCUCuGCC-GG--CGcGUCCCGGACUu -5'
29061 3' -64 NC_006146.1 + 167263 0.67 0.490213
Target:  5'- cGGGGAGGgcccggGGCCGCGCGuGGGgaUGGc -3'
miRNA:   3'- -CCCCUCUg-----CCGGCGCGU-CCCggACUu -5'
29061 3' -64 NC_006146.1 + 44022 0.67 0.481186
Target:  5'- cGGGGAGGgGGCgGCcgAGGGCCc--- -3'
miRNA:   3'- -CCCCUCUgCCGgCGcgUCCCGGacuu -5'
29061 3' -64 NC_006146.1 + 14800 0.67 0.47224
Target:  5'- aGGGGaAGGagaGGCCG-GCcGGGCCgGAGg -3'
miRNA:   3'- -CCCC-UCUg--CCGGCgCGuCCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 76859 0.67 0.490213
Target:  5'- aGGGAuacGCGGCgGCGCucGGGGCCg--- -3'
miRNA:   3'- cCCCUc--UGCCGgCGCG--UCCCGGacuu -5'
29061 3' -64 NC_006146.1 + 24108 0.67 0.499317
Target:  5'- cGGGucgaGGGCGGCUG-GCAccGGGCCUGu- -3'
miRNA:   3'- cCCC----UCUGCCGGCgCGU--CCCGGACuu -5'
29061 3' -64 NC_006146.1 + 42626 0.67 0.527063
Target:  5'- uGGGGcu-CGGCCGcCGCcguGGGCCUc-- -3'
miRNA:   3'- -CCCCucuGCCGGC-GCGu--CCCGGAcuu -5'
29061 3' -64 NC_006146.1 + 39676 0.67 0.517747
Target:  5'- -uGGAGGCGGCgG-GCuccuGGGCCUGc- -3'
miRNA:   3'- ccCCUCUGCCGgCgCGu---CCCGGACuu -5'
29061 3' -64 NC_006146.1 + 157731 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 151576 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 148498 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 145420 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 142342 0.67 0.517747
Target:  5'- cGGGcAGGCcgggcaGGCCGgGUcuuGGGCCUGGGa -3'
miRNA:   3'- cCCC-UCUG------CCGGCgCGu--CCCGGACUU- -5'
29061 3' -64 NC_006146.1 + 13331 0.67 0.507576
Target:  5'- cGGuGGAGuCGGCCGCggccuacGCGGaGGCCa--- -3'
miRNA:   3'- -CC-CCUCuGCCGGCG-------CGUC-CCGGacuu -5'
29061 3' -64 NC_006146.1 + 71875 0.67 0.505735
Target:  5'- uGGGGGGccucuacACGGCCGUcacgcggacccuccuGCGcgcggccucugaccuGGGCCUGAc -3'
miRNA:   3'- -CCCCUC-------UGCCGGCG---------------CGU---------------CCCGGACUu -5'
29061 3' -64 NC_006146.1 + 116837 0.67 0.499317
Target:  5'- cGGGAcGCGGCgGCcaGguGGGcCCUGAc -3'
miRNA:   3'- cCCCUcUGCCGgCG--CguCCC-GGACUu -5'
29061 3' -64 NC_006146.1 + 26048 0.67 0.499317
Target:  5'- gGGGGAGAgccgcugcaauUGGcCCGcCGCAacguGGGCCgGAAa -3'
miRNA:   3'- -CCCCUCU-----------GCC-GGC-GCGU----CCCGGaCUU- -5'
29061 3' -64 NC_006146.1 + 78013 0.67 0.499317
Target:  5'- cGGGGGGuggUGGCCuaGCAGGuaCCUGGg -3'
miRNA:   3'- -CCCCUCu--GCCGGcgCGUCCc-GGACUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.