miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 5' -56.3 NC_006146.1 + 37758 0.66 0.912434
Target:  5'- gUCUCCGGgAUGuGUaGGg-AGGUGCCUUg -3'
miRNA:   3'- -AGAGGUCgUGC-CA-CCagUUCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 52701 0.66 0.912434
Target:  5'- gCUCCGG-GCGGgaGGUCAGGgggcgGCCg- -3'
miRNA:   3'- aGAGGUCgUGCCa-CCAGUUCa----CGGag -5'
29061 5' -56.3 NC_006146.1 + 39131 0.66 0.910645
Target:  5'- aUUCCgcguuuaaaacgauAGCAUGGUGGcCGGGU-CCUCc -3'
miRNA:   3'- aGAGG--------------UCGUGCCACCaGUUCAcGGAG- -5'
29061 5' -56.3 NC_006146.1 + 27669 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 15357 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 24591 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 21513 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 18435 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 12278 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 96893 0.66 0.90639
Target:  5'- uUCUCCAGCGugaggccgUGGUGGUCA---GUUUCc -3'
miRNA:   3'- -AGAGGUCGU--------GCCACCAGUucaCGGAG- -5'
29061 5' -56.3 NC_006146.1 + 91754 0.66 0.90639
Target:  5'- uUCUCCGGguucUugGGUGGgugCcugGGGUGCCg- -3'
miRNA:   3'- -AGAGGUC----GugCCACCa--G---UUCACGGag -5'
29061 5' -56.3 NC_006146.1 + 53441 0.66 0.904531
Target:  5'- -aUCCgaaAGgGCGGUGGUgucugcccgggaggCGcgGGUGCCUCg -3'
miRNA:   3'- agAGG---UCgUGCCACCA--------------GU--UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 103678 0.66 0.900111
Target:  5'- -aUCUGGgGCGGgcGGUCGAG-GUCUCg -3'
miRNA:   3'- agAGGUCgUGCCa-CCAGUUCaCGGAG- -5'
29061 5' -56.3 NC_006146.1 + 52439 0.66 0.893601
Target:  5'- cCUCCAGUuuGG-GGUCGacgcccuggagAGggGCCUCa -3'
miRNA:   3'- aGAGGUCGugCCaCCAGU-----------UCa-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 112449 0.66 0.886862
Target:  5'- cCUCCGGCcguGGUGGUCAcuGG-GCUUg -3'
miRNA:   3'- aGAGGUCGug-CCACCAGU--UCaCGGAg -5'
29061 5' -56.3 NC_006146.1 + 107289 0.66 0.879899
Target:  5'- aUCUCCAGCACc---GUCAuguGUGCCa- -3'
miRNA:   3'- -AGAGGUCGUGccacCAGUu--CACGGag -5'
29061 5' -56.3 NC_006146.1 + 54419 0.67 0.872716
Target:  5'- gCUCCucCGCGGUGGagAGG-GUCUCg -3'
miRNA:   3'- aGAGGucGUGCCACCagUUCaCGGAG- -5'
29061 5' -56.3 NC_006146.1 + 106648 0.67 0.872716
Target:  5'- gCUgCGGC-CGGcUGGUCAGG-GCCg- -3'
miRNA:   3'- aGAgGUCGuGCC-ACCAGUUCaCGGag -5'
29061 5' -56.3 NC_006146.1 + 108544 0.68 0.833692
Target:  5'- cUCUCCGGCGCGGcGuUgGAGUGgCUg -3'
miRNA:   3'- -AGAGGUCGUGCCaCcAgUUCACgGAg -5'
29061 5' -56.3 NC_006146.1 + 25204 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.