miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 3' -56.9 NC_006146.1 + 167612 0.66 0.915285
Target:  5'- --gGGGcCUCGGgggCGGAGGGGGGGGUc -3'
miRNA:   3'- gcaCUC-GAGCUg--GCCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 170407 0.66 0.915285
Target:  5'- --gGGGcCUCGGgggCGGAGGGGGGGGUc -3'
miRNA:   3'- gcaCUC-GAGCUg--GCCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 169476 0.66 0.915285
Target:  5'- --gGGGcCUCGGgggCGGAGGGGGGGGUc -3'
miRNA:   3'- gcaCUC-GAGCUg--GCCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 168544 0.66 0.915285
Target:  5'- --gGGGcCUCGGgggCGGAGGGGGGGGUc -3'
miRNA:   3'- gcaCUC-GAGCUg--GCCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 57093 0.66 0.909469
Target:  5'- --cGAGCggcgcguccUGGCCaGcGGGGAGAGGGUGg -3'
miRNA:   3'- gcaCUCGa--------GCUGG-C-CUCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 128439 0.66 0.909469
Target:  5'- --cGGGCcgcaGACCGGgcGGGAGGGGGa- -3'
miRNA:   3'- gcaCUCGag--CUGGCC--UCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 136994 0.66 0.902811
Target:  5'- cCGgagGAGCUCcaggacggggguaGGCCGGGcacaccccGGGGAGGAg- -3'
miRNA:   3'- -GCa--CUCGAG-------------CUGGCCU--------CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 137181 0.66 0.902811
Target:  5'- cCGgagGAGCUCcagaacggggguaGGCCGGGcacaccccGGGGAGGAa- -3'
miRNA:   3'- -GCa--CUCGAG-------------CUGGCCU--------CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 168790 0.66 0.896522
Target:  5'- gGUGGGCgcucagaUCGGCgCGGGGGAGccccGGGGc- -3'
miRNA:   3'- gCACUCG-------AGCUG-GCCUCCUC----UCCUac -5'
29064 3' -56.9 NC_006146.1 + 169722 0.66 0.896522
Target:  5'- gGUGGGCgcucagaUCGGCgCGGGGGAGccccGGGGc- -3'
miRNA:   3'- gCACUCG-------AGCUG-GCCUCCUC----UCCUac -5'
29064 3' -56.9 NC_006146.1 + 167858 0.66 0.896522
Target:  5'- gGUGGGCgcucagaUCGGCgCGGGGGAGccccGGGGc- -3'
miRNA:   3'- gCACUCG-------AGCUG-GCCUCCUC----UCCUac -5'
29064 3' -56.9 NC_006146.1 + 167491 0.66 0.883966
Target:  5'- gGUGuGCcUGG-CGGGGGAGAGGGg- -3'
miRNA:   3'- gCACuCGaGCUgGCCUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 168423 0.66 0.883966
Target:  5'- gGUGuGCcUGG-CGGGGGAGAGGGg- -3'
miRNA:   3'- gCACuCGaGCUgGCCUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 170286 0.66 0.883966
Target:  5'- gGUGuGCcUGG-CGGGGGAGAGGGg- -3'
miRNA:   3'- gCACuCGaGCUgGCCUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 169355 0.66 0.883966
Target:  5'- gGUGuGCcUGG-CGGGGGAGAGGGg- -3'
miRNA:   3'- gCACuCGaGCUgGCCUCCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 72017 0.67 0.877046
Target:  5'- gGUGAGU---AgCGGGGGAGuGGGUGg -3'
miRNA:   3'- gCACUCGagcUgGCCUCCUCuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 33205 0.67 0.855045
Target:  5'- cCGggGGGa--GGCCGGAGGGGgagccGGGAUGg -3'
miRNA:   3'- -GCa-CUCgagCUGGCCUCCUC-----UCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 123051 0.67 0.855045
Target:  5'- --cGGGC---GCUGGAGGAGAGGGUc -3'
miRNA:   3'- gcaCUCGagcUGGCCUCCUCUCCUAc -5'
29064 3' -56.9 NC_006146.1 + 51847 0.68 0.842588
Target:  5'- --gGGGCUCGGggccuggcccgagcCCGGggauggggaugaagAGGGGAGGGUGg -3'
miRNA:   3'- gcaCUCGAGCU--------------GGCC--------------UCCUCUCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 135920 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.