miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 3' -56.9 NC_006146.1 + 144642 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 141564 0.72 0.573593
Target:  5'- aGUGAGCUCaggaGCCGGGgccucGGGGAGGGa- -3'
miRNA:   3'- gCACUCGAGc---UGGCCU-----CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 137593 0.68 0.797246
Target:  5'- --gGAGCUCgGGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAG-CUGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 137500 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 137407 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 137314 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 137221 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 137181 0.66 0.902811
Target:  5'- cCGgagGAGCUCcagaacggggguaGGCCGGGcacaccccGGGGAGGAa- -3'
miRNA:   3'- -GCa--CUCGAG-------------CUGGCCU--------CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 137128 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 137035 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 136994 0.66 0.902811
Target:  5'- cCGgagGAGCUCcaggacggggguaGGCCGGGcacaccccGGGGAGGAg- -3'
miRNA:   3'- -GCa--CUCGAG-------------CUGGCCU--------CCUCUCCUac -5'
29064 3' -56.9 NC_006146.1 + 136942 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 136849 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 136756 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 136664 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 136571 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 136478 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 136385 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 136292 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5'
29064 3' -56.9 NC_006146.1 + 136199 0.68 0.839399
Target:  5'- --gGAGCUCGggGCCGGGGGcc-GGGUGc -3'
miRNA:   3'- gcaCUCGAGC--UGGCCUCCucuCCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.