miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 115202 0.66 0.778722
Target:  5'- gCGGGcAGAGccccccGGCGGCGGccGUGCCc- -3'
miRNA:   3'- -GCCCuUCUUa-----CCGCCGCCc-CACGGac -5'
29065 5' -60.3 NC_006146.1 + 69530 0.66 0.778722
Target:  5'- uGGuGAGGAAUgGGgGGUGGGG-GCaUUGa -3'
miRNA:   3'- gCC-CUUCUUA-CCgCCGCCCCaCG-GAC- -5'
29065 5' -60.3 NC_006146.1 + 51457 0.66 0.778722
Target:  5'- gCGGGAcuAGAgguGUGGagaugGGCGGGG-GCUg- -3'
miRNA:   3'- -GCCCU--UCU---UACCg----CCGCCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 166666 0.66 0.778722
Target:  5'- gCGGGAAGGggGaGCGGUGug--GCCUGg -3'
miRNA:   3'- -GCCCUUCUuaC-CGCCGCcccaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 115935 0.66 0.778722
Target:  5'- aCGGGGgcagcGGuagcGGCGGCGGcGGUcGCCc- -3'
miRNA:   3'- -GCCCU-----UCuua-CCGCCGCC-CCA-CGGac -5'
29065 5' -60.3 NC_006146.1 + 33222 0.66 0.7697
Target:  5'- gGGGAgccGGGAUGG-GGCuGGGGUuCCg- -3'
miRNA:   3'- gCCCU---UCUUACCgCCG-CCCCAcGGac -5'
29065 5' -60.3 NC_006146.1 + 132862 0.66 0.7697
Target:  5'- -aGGAGaGGUGGgGGUGGGGguaaUGUCUGa -3'
miRNA:   3'- gcCCUUcUUACCgCCGCCCC----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 137391 0.66 0.7697
Target:  5'- aGGGAGGGA-GGCcGgGaGGGUGCUg- -3'
miRNA:   3'- gCCCUUCUUaCCGcCgC-CCCACGGac -5'
29065 5' -60.3 NC_006146.1 + 170493 0.66 0.764232
Target:  5'- gCGGGggGcuuccccggacccccAGcGcGCGGCGGGcGggGCCUGa -3'
miRNA:   3'- -GCCCuuC---------------UUaC-CGCCGCCC-Ca-CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 90648 0.66 0.760564
Target:  5'- uGGGAGGcgccGCGGCGaGGGUGgCa- -3'
miRNA:   3'- gCCCUUCuuacCGCCGC-CCCACgGac -5'
29065 5' -60.3 NC_006146.1 + 48322 0.66 0.760564
Target:  5'- -cGGAGGugcUGGCGGUGGuGG-GCCa- -3'
miRNA:   3'- gcCCUUCuu-ACCGCCGCC-CCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 40719 0.66 0.751322
Target:  5'- uCGGGucucAGGuccgGGCaGGCGGGcccGUGCUUGg -3'
miRNA:   3'- -GCCCu---UCUua--CCG-CCGCCC---CACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 101704 0.66 0.741983
Target:  5'- gGGGggGAGaGaGCaGCGGGG-GUUUGg -3'
miRNA:   3'- gCCCuuCUUaC-CGcCGCCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 31692 0.66 0.741983
Target:  5'- aGGGAAGggUGGgGGacCGcGGcUGCCa- -3'
miRNA:   3'- gCCCUUCuuACCgCC--GC-CCcACGGac -5'
29065 5' -60.3 NC_006146.1 + 112216 0.66 0.741982
Target:  5'- -uGGAcAGggUGGCGGCcuGGGUGgUUGc -3'
miRNA:   3'- gcCCU-UCuuACCGCCGc-CCCACgGAC- -5'
29065 5' -60.3 NC_006146.1 + 46245 0.66 0.741982
Target:  5'- aGGGAGGGccGGUGaaGCGGcGGUGCg-- -3'
miRNA:   3'- gCCCUUCUuaCCGC--CGCC-CCACGgac -5'
29065 5' -60.3 NC_006146.1 + 153411 0.66 0.741982
Target:  5'- aGGGAGuucccGGgGGCGGGuGUGgCUGg -3'
miRNA:   3'- gCCCUUcuua-CCgCCGCCC-CACgGAC- -5'
29065 5' -60.3 NC_006146.1 + 57365 0.66 0.741982
Target:  5'- aGGGAGGcu--GCGGCGGuGGcGCCg- -3'
miRNA:   3'- gCCCUUCuuacCGCCGCC-CCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 162035 0.66 0.732554
Target:  5'- uGGGAGcc-UGGgGGCGGGGgcagGCUg- -3'
miRNA:   3'- gCCCUUcuuACCgCCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 129378 0.66 0.731606
Target:  5'- aGGGAAGc--GGCGGCcuccucuGGGGccggaaGCCUGc -3'
miRNA:   3'- gCCCUUCuuaCCGCCG-------CCCCa-----CGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.