Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29065 | 5' | -60.3 | NC_006146.1 | + | 115935 | 0.66 | 0.778722 |
Target: 5'- aCGGGGgcagcGGuagcGGCGGCGGcGGUcGCCc- -3' miRNA: 3'- -GCCCU-----UCuua-CCGCCGCC-CCA-CGGac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 115202 | 0.66 | 0.778722 |
Target: 5'- gCGGGcAGAGccccccGGCGGCGGccGUGCCc- -3' miRNA: 3'- -GCCCuUCUUa-----CCGCCGCCc-CACGGac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 51457 | 0.66 | 0.778722 |
Target: 5'- gCGGGAcuAGAgguGUGGagaugGGCGGGG-GCUg- -3' miRNA: 3'- -GCCCU--UCU---UACCg----CCGCCCCaCGGac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 69530 | 0.66 | 0.778722 |
Target: 5'- uGGuGAGGAAUgGGgGGUGGGG-GCaUUGa -3' miRNA: 3'- gCC-CUUCUUA-CCgCCGCCCCaCG-GAC- -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 166666 | 0.66 | 0.778722 |
Target: 5'- gCGGGAAGGggGaGCGGUGug--GCCUGg -3' miRNA: 3'- -GCCCUUCUuaC-CGCCGCcccaCGGAC- -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 132862 | 0.66 | 0.7697 |
Target: 5'- -aGGAGaGGUGGgGGUGGGGguaaUGUCUGa -3' miRNA: 3'- gcCCUUcUUACCgCCGCCCC----ACGGAC- -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 33222 | 0.66 | 0.7697 |
Target: 5'- gGGGAgccGGGAUGG-GGCuGGGGUuCCg- -3' miRNA: 3'- gCCCU---UCUUACCgCCG-CCCCAcGGac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 137391 | 0.66 | 0.7697 |
Target: 5'- aGGGAGGGA-GGCcGgGaGGGUGCUg- -3' miRNA: 3'- gCCCUUCUUaCCGcCgC-CCCACGGac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 170493 | 0.66 | 0.764232 |
Target: 5'- gCGGGggGcuuccccggacccccAGcGcGCGGCGGGcGggGCCUGa -3' miRNA: 3'- -GCCCuuC---------------UUaC-CGCCGCCC-Ca-CGGAC- -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 90648 | 0.66 | 0.760564 |
Target: 5'- uGGGAGGcgccGCGGCGaGGGUGgCa- -3' miRNA: 3'- gCCCUUCuuacCGCCGC-CCCACgGac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 48322 | 0.66 | 0.760564 |
Target: 5'- -cGGAGGugcUGGCGGUGGuGG-GCCa- -3' miRNA: 3'- gcCCUUCuu-ACCGCCGCC-CCaCGGac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 40719 | 0.66 | 0.751322 |
Target: 5'- uCGGGucucAGGuccgGGCaGGCGGGcccGUGCUUGg -3' miRNA: 3'- -GCCCu---UCUua--CCG-CCGCCC---CACGGAC- -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 31692 | 0.66 | 0.741983 |
Target: 5'- aGGGAAGggUGGgGGacCGcGGcUGCCa- -3' miRNA: 3'- gCCCUUCuuACCgCC--GC-CCcACGGac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 101704 | 0.66 | 0.741983 |
Target: 5'- gGGGggGAGaGaGCaGCGGGG-GUUUGg -3' miRNA: 3'- gCCCuuCUUaC-CGcCGCCCCaCGGAC- -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 46245 | 0.66 | 0.741982 |
Target: 5'- aGGGAGGGccGGUGaaGCGGcGGUGCg-- -3' miRNA: 3'- gCCCUUCUuaCCGC--CGCC-CCACGgac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 153411 | 0.66 | 0.741982 |
Target: 5'- aGGGAGuucccGGgGGCGGGuGUGgCUGg -3' miRNA: 3'- gCCCUUcuua-CCgCCGCCC-CACgGAC- -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 112216 | 0.66 | 0.741982 |
Target: 5'- -uGGAcAGggUGGCGGCcuGGGUGgUUGc -3' miRNA: 3'- gcCCU-UCuuACCGCCGc-CCCACgGAC- -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 57365 | 0.66 | 0.741982 |
Target: 5'- aGGGAGGcu--GCGGCGGuGGcGCCg- -3' miRNA: 3'- gCCCUUCuuacCGCCGCC-CCaCGGac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 162035 | 0.66 | 0.732554 |
Target: 5'- uGGGAGcc-UGGgGGCGGGGgcagGCUg- -3' miRNA: 3'- gCCCUUcuuACCgCCGCCCCa---CGGac -5' |
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29065 | 5' | -60.3 | NC_006146.1 | + | 129378 | 0.66 | 0.731606 |
Target: 5'- aGGGAAGc--GGCGGCcuccucuGGGGccggaaGCCUGc -3' miRNA: 3'- gCCCUUCuuaCCGCCG-------CCCCa-----CGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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