miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 5' -54.8 NC_006146.1 + 155550 0.66 0.953037
Target:  5'- aGAGGGcgUUggagcCGGGCUcGCGCGGgGCg -3'
miRNA:   3'- aCUCCU--AGaa---GUCCGAcUGCGCCaCG- -5'
29067 5' -54.8 NC_006146.1 + 154265 0.66 0.948916
Target:  5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3'
miRNA:   3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5'
29067 5' -54.8 NC_006146.1 + 151187 0.66 0.948916
Target:  5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3'
miRNA:   3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5'
29067 5' -54.8 NC_006146.1 + 148109 0.66 0.948916
Target:  5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3'
miRNA:   3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5'
29067 5' -54.8 NC_006146.1 + 145031 0.66 0.948916
Target:  5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3'
miRNA:   3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5'
29067 5' -54.8 NC_006146.1 + 141953 0.66 0.948916
Target:  5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3'
miRNA:   3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5'
29067 5' -54.8 NC_006146.1 + 157343 0.66 0.948916
Target:  5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3'
miRNA:   3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5'
29067 5' -54.8 NC_006146.1 + 93317 0.66 0.944561
Target:  5'- -aAGGAaCaUCAGGCgGAUGCGGUuucaGCc -3'
miRNA:   3'- acUCCUaGaAGUCCGaCUGCGCCA----CG- -5'
29067 5' -54.8 NC_006146.1 + 49582 0.66 0.944561
Target:  5'- cUGAGGccagggUgGGGCUGugGaUGGUGUg -3'
miRNA:   3'- -ACUCCuaga--AgUCCGACugC-GCCACG- -5'
29067 5' -54.8 NC_006146.1 + 99580 0.66 0.93997
Target:  5'- gGAGGuagaagaCGGGCUuggGGcCGCGGUGCu -3'
miRNA:   3'- aCUCCuagaa--GUCCGA---CU-GCGCCACG- -5'
29067 5' -54.8 NC_006146.1 + 127392 0.66 0.937101
Target:  5'- gGAGGuGUCUUgGGGCUGggccccgccgccggaGC-CGGUGUc -3'
miRNA:   3'- aCUCC-UAGAAgUCCGAC---------------UGcGCCACG- -5'
29067 5' -54.8 NC_006146.1 + 88919 0.67 0.924764
Target:  5'- cUGGGGcUCUUguGGCUGAgGCuGagGCu -3'
miRNA:   3'- -ACUCCuAGAAguCCGACUgCGcCa-CG- -5'
29067 5' -54.8 NC_006146.1 + 92903 0.67 0.919216
Target:  5'- gGAGGAUCacugUGGGUacuugggGAUGUGGUGUg -3'
miRNA:   3'- aCUCCUAGaa--GUCCGa------CUGCGCCACG- -5'
29067 5' -54.8 NC_006146.1 + 69404 0.68 0.890632
Target:  5'- uUGAGGAacacggUCUgcucgccaaaguuggUCAGGCUGACGCuGaccccaccucUGCg -3'
miRNA:   3'- -ACUCCU------AGA---------------AGUCCGACUGCGcC----------ACG- -5'
29067 5' -54.8 NC_006146.1 + 39879 0.68 0.873783
Target:  5'- gGAGGAggCUg-AGGCUGA-GCGGccUGCg -3'
miRNA:   3'- aCUCCUa-GAagUCCGACUgCGCC--ACG- -5'
29067 5' -54.8 NC_006146.1 + 114443 0.68 0.866389
Target:  5'- cUGGGGAUCUUCGGacuuggagauCUGGCccaGCaGGUGCu -3'
miRNA:   3'- -ACUCCUAGAAGUCc---------GACUG---CG-CCACG- -5'
29067 5' -54.8 NC_006146.1 + 170303 0.69 0.858783
Target:  5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3'
miRNA:   3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5'
29067 5' -54.8 NC_006146.1 + 167508 0.69 0.858783
Target:  5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3'
miRNA:   3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5'
29067 5' -54.8 NC_006146.1 + 168440 0.69 0.858783
Target:  5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3'
miRNA:   3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5'
29067 5' -54.8 NC_006146.1 + 169372 0.69 0.858783
Target:  5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3'
miRNA:   3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.