miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 146010 0.67 0.982781
Target:  5'- uGGCCcacCGAGGGGCaGgggGGCAGCuccugGCAc -3'
miRNA:   3'- -CCGGa--GCUUUUCG-Ca--CCGUUGua---CGU- -5'
29085 3' -51.5 NC_006146.1 + 56784 0.67 0.980686
Target:  5'- aGGCCuccUCGguGAGCGcGGCGGCcgucugGCGg -3'
miRNA:   3'- -CCGG---AGCuuUUCGCaCCGUUGua----CGU- -5'
29085 3' -51.5 NC_006146.1 + 55920 0.67 0.978407
Target:  5'- uGGCCUUGAuguccGCGgccgugGGCugcuGCGUGCc -3'
miRNA:   3'- -CCGGAGCUuuu--CGCa-----CCGu---UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 69844 0.67 0.978407
Target:  5'- -aCCggCGAGAAGCGgguacgcaGGCGcagGCAUGCAg -3'
miRNA:   3'- ccGGa-GCUUUUCGCa-------CCGU---UGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 52236 0.67 0.975935
Target:  5'- aGGCCUCGGgcagAAAGUagagGUGGaCGcACGUGUAc -3'
miRNA:   3'- -CCGGAGCU----UUUCG----CACC-GU-UGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 41065 0.68 0.973261
Target:  5'- gGGCucgCUCGGAcggGGGCGUGGCGggugggccGCggGCGa -3'
miRNA:   3'- -CCG---GAGCUU---UUCGCACCGU--------UGuaCGU- -5'
29085 3' -51.5 NC_006146.1 + 128764 0.68 0.973261
Target:  5'- aGGCCUUcuucuGGAGUGUGGcCAGCAggGCc -3'
miRNA:   3'- -CCGGAGcu---UUUCGCACC-GUUGUa-CGu -5'
29085 3' -51.5 NC_006146.1 + 66306 0.68 0.973261
Target:  5'- cGGCCaUCGucGGAGaCGUGGUAGCAgaagGUu -3'
miRNA:   3'- -CCGG-AGCu-UUUC-GCACCGUUGUa---CGu -5'
29085 3' -51.5 NC_006146.1 + 140751 0.68 0.970379
Target:  5'- cGCuCUCGGAu-GCGUGGC--CAUGCc -3'
miRNA:   3'- cCG-GAGCUUuuCGCACCGuuGUACGu -5'
29085 3' -51.5 NC_006146.1 + 51821 0.68 0.967282
Target:  5'- cGGCCuccUCGGGAAGCGccggaggugGGCuGCGguUGCAg -3'
miRNA:   3'- -CCGG---AGCUUUUCGCa--------CCGuUGU--ACGU- -5'
29085 3' -51.5 NC_006146.1 + 86501 0.69 0.957018
Target:  5'- gGGCCUUGAGGGGCagcugggcuugaggGGCAACuggGCu -3'
miRNA:   3'- -CCGGAGCUUUUCGca------------CCGUUGua-CGu -5'
29085 3' -51.5 NC_006146.1 + 56346 0.69 0.952607
Target:  5'- aGGCCgccCGGAgcagguaguAGGCGUGGUGGCGgaGCAc -3'
miRNA:   3'- -CCGGa--GCUU---------UUCGCACCGUUGUa-CGU- -5'
29085 3' -51.5 NC_006146.1 + 56307 0.69 0.952607
Target:  5'- uGGCCgugcuggaCGAAguGAGCGUGGaCAGCcugAUGCu -3'
miRNA:   3'- -CCGGa-------GCUU--UUCGCACC-GUUG---UACGu -5'
29085 3' -51.5 NC_006146.1 + 39670 0.69 0.948341
Target:  5'- uGGCCUUGGAGgcGGCG-GGCuccugGGCcUGCAg -3'
miRNA:   3'- -CCGGAGCUUU--UCGCaCCG-----UUGuACGU- -5'
29085 3' -51.5 NC_006146.1 + 127436 0.69 0.947013
Target:  5'- cGGCCgcCGAGGAGgcugccgcuccagaUGUGGCGGCccGCAg -3'
miRNA:   3'- -CCGGa-GCUUUUC--------------GCACCGUUGuaCGU- -5'
29085 3' -51.5 NC_006146.1 + 46086 0.69 0.943828
Target:  5'- gGGCCUCGggGGcgaagcaccgucGCGcGaGCAGCAgcagGCAu -3'
miRNA:   3'- -CCGGAGCuuUU------------CGCaC-CGUUGUa---CGU- -5'
29085 3' -51.5 NC_006146.1 + 132973 0.69 0.943828
Target:  5'- gGGuCCUCGggGGGCGgUGGaGACcgcggGUGCGg -3'
miRNA:   3'- -CC-GGAGCuuUUCGC-ACCgUUG-----UACGU- -5'
29085 3' -51.5 NC_006146.1 + 50713 0.69 0.943828
Target:  5'- aGGCCUgaaagccggCGuuGAGCGggGGCGACGggGCGu -3'
miRNA:   3'- -CCGGA---------GCuuUUCGCa-CCGUUGUa-CGU- -5'
29085 3' -51.5 NC_006146.1 + 71456 0.69 0.943828
Target:  5'- uGGCgC-CGAGGAGCGagGGCcuCAUGCu -3'
miRNA:   3'- -CCG-GaGCUUUUCGCa-CCGuuGUACGu -5'
29085 3' -51.5 NC_006146.1 + 56841 0.7 0.934052
Target:  5'- cGGCCUCuGGcGGCGggGGCGGCA-GCu -3'
miRNA:   3'- -CCGGAGcUUuUCGCa-CCGUUGUaCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.