miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29090 3' -54.2 NC_006146.1 + 54951 0.66 0.97563
Target:  5'- gCCCGcGG-GGCgaccgccgCCGCCGCu -3'
miRNA:   3'- -GGGCaCCuCCGauaaauagGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 46775 0.66 0.975379
Target:  5'- cCCCGggcGGAuGGCUGg----CCgGCCGg -3'
miRNA:   3'- -GGGCa--CCU-CCGAUaaauaGGgCGGCg -5'
29090 3' -54.2 NC_006146.1 + 53463 0.66 0.975379
Target:  5'- gCCCG-GGAGGCgcgggUGcCUCGUCGg -3'
miRNA:   3'- -GGGCaCCUCCGauaa-AUaGGGCGGCg -5'
29090 3' -54.2 NC_006146.1 + 41635 0.66 0.975379
Target:  5'- aCCC-UGGGGGUUAacuUUUA-CCUGUgGCg -3'
miRNA:   3'- -GGGcACCUCCGAU---AAAUaGGGCGgCG- -5'
29090 3' -54.2 NC_006146.1 + 45235 0.66 0.975379
Target:  5'- aCCGgacGGAGGCUGgggUGUugUCgGCCGa -3'
miRNA:   3'- gGGCa--CCUCCGAUaa-AUA--GGgCGGCg -5'
29090 3' -54.2 NC_006146.1 + 118056 0.66 0.974094
Target:  5'- cCCCGggcGGGGGCggcggcggcucggCCCuCCGCa -3'
miRNA:   3'- -GGGCa--CCUCCGauaaaua------GGGcGGCG- -5'
29090 3' -54.2 NC_006146.1 + 56575 0.66 0.972762
Target:  5'- cUCCGUcaGGGGCggccgggcgccgagCCCGCCGCc -3'
miRNA:   3'- -GGGCAc-CUCCGauaaaua-------GGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 146955 0.66 0.972762
Target:  5'- aCCCG-GGGGGaaag-UcgCCCGCCc- -3'
miRNA:   3'- -GGGCaCCUCCgauaaAuaGGGCGGcg -5'
29090 3' -54.2 NC_006146.1 + 78811 0.66 0.972762
Target:  5'- cCCUG-GGAGGCccacgcGUCCaggcaGCCGUg -3'
miRNA:   3'- -GGGCaCCUCCGauaaa-UAGGg----CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 144957 0.66 0.972762
Target:  5'- gCCCuUGGAGGCgacgAUgu-UCCCGUUa- -3'
miRNA:   3'- -GGGcACCUCCGa---UAaauAGGGCGGcg -5'
29090 3' -54.2 NC_006146.1 + 167664 0.66 0.972762
Target:  5'- gCCCG-GG-GGCg---UGUCCCGCg-- -3'
miRNA:   3'- -GGGCaCCuCCGauaaAUAGGGCGgcg -5'
29090 3' -54.2 NC_006146.1 + 136768 0.66 0.972489
Target:  5'- cUCCG-GGAGGC-------CCgGCCGCg -3'
miRNA:   3'- -GGGCaCCUCCGauaaauaGGgCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 21718 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 27874 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 125101 0.66 0.969949
Target:  5'- gCCGUGGcGGCggccu-UCCUcgGCCGUc -3'
miRNA:   3'- gGGCACCuCCGauaaauAGGG--CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 18640 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 12483 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 15562 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 39651 0.66 0.969949
Target:  5'- gCCCGUGauGAGGCUGgagAUCCagGCUcuggggGCg -3'
miRNA:   3'- -GGGCAC--CUCCGAUaaaUAGGg-CGG------CG- -5'
29090 3' -54.2 NC_006146.1 + 24796 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.