miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29091 3' -57.7 NC_006146.1 + 50143 0.66 0.878089
Target:  5'- uUUUGAUCCGGGAGAuuuUCGCgUCUCGa- -3'
miRNA:   3'- uGGACUAGGCCCUCU---AGUG-GGGGUag -5'
29091 3' -57.7 NC_006146.1 + 121355 0.66 0.870964
Target:  5'- gGCCUGG-CCGGcGuGGccucCGCCCCCAg- -3'
miRNA:   3'- -UGGACUaGGCC-CuCUa---GUGGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 137789 0.66 0.87024
Target:  5'- gGCCUGGUCCGccggauccgcuucGGGGGUC-CgCCgGUCc -3'
miRNA:   3'- -UGGACUAGGC-------------CCUCUAGuGgGGgUAG- -5'
29091 3' -57.7 NC_006146.1 + 117132 0.66 0.863632
Target:  5'- cCCUcGUCCGGcGAGAccuccgccCGCCgCCCGUCu -3'
miRNA:   3'- uGGAcUAGGCC-CUCUa-------GUGG-GGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 157482 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 154404 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 151326 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 148248 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 145170 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 142092 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 71606 0.66 0.863632
Target:  5'- cCCUGAccaggCGGGAGAUUAaCCCCAg- -3'
miRNA:   3'- uGGACUag---GCCCUCUAGUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 121630 0.66 0.863632
Target:  5'- uGCCUGGaCC---AGAUCGCCCCCuUCu -3'
miRNA:   3'- -UGGACUaGGcccUCUAGUGGGGGuAG- -5'
29091 3' -57.7 NC_006146.1 + 38958 0.66 0.863632
Target:  5'- gGCCuUGGcaUCCGGGuGG--GCCCCCAg- -3'
miRNA:   3'- -UGG-ACU--AGGCCCuCUagUGGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 167196 0.66 0.856098
Target:  5'- cGCCcggGGUCCcGGGGGG-CGgcgcgcggccuuCCCCCGUCu -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUaGU------------GGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 169060 0.66 0.856098
Target:  5'- cGCCcggGGUCCcGGGGGG-CGgcgcgcggccuuCCCCCGUCu -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUaGU------------GGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 111304 0.66 0.856098
Target:  5'- gACCUGA--CGGGGGAcgcCGCCCuCCAgaUCg -3'
miRNA:   3'- -UGGACUagGCCCUCUa--GUGGG-GGU--AG- -5'
29091 3' -57.7 NC_006146.1 + 168128 0.66 0.856098
Target:  5'- cGCCcggGGUCCcGGGGGG-CGgcgcgcggccuuCCCCCGUCu -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUaGU------------GGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 169992 0.66 0.856098
Target:  5'- cGCCcggGGUCCcGGGGGG-CGgcgcgcggccuuCCCCCGUCu -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUaGU------------GGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 136760 0.66 0.856098
Target:  5'- cGCCgGGgcUCCGGGAGGcccggccgcgaUCcuCCCCCGUg -3'
miRNA:   3'- -UGGaCU--AGGCCCUCU-----------AGu-GGGGGUAg -5'
29091 3' -57.7 NC_006146.1 + 31753 0.66 0.856098
Target:  5'- cGCCccc-CCGGGGGAcgggaGCCCCCGUUc -3'
miRNA:   3'- -UGGacuaGGCCCUCUag---UGGGGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.