miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29091 3' -57.7 NC_006146.1 + 120721 1.09 0.002072
Target:  5'- cACCUGAUCCGGGAGAUCACCCCCAUCg -3'
miRNA:   3'- -UGGACUAGGCCCUCUAGUGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 153749 0.67 0.832346
Target:  5'- cACUUGAaggcUCCaGGGAGggCcauGCCCaCCGUCa -3'
miRNA:   3'- -UGGACU----AGG-CCCUCuaG---UGGG-GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 111304 0.66 0.856098
Target:  5'- gACCUGA--CGGGGGAcgcCGCCCuCCAgaUCg -3'
miRNA:   3'- -UGGACUagGCCCUCUa--GUGGG-GGU--AG- -5'
29091 3' -57.7 NC_006146.1 + 137789 0.66 0.87024
Target:  5'- gGCCUGGUCCGccggauccgcuucGGGGGUC-CgCCgGUCc -3'
miRNA:   3'- -UGGACUAGGC-------------CCUCUAGuGgGGgUAG- -5'
29091 3' -57.7 NC_006146.1 + 14383 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 17461 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 23617 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 26695 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 68938 0.68 0.780296
Target:  5'- gGCCUGGgcCCaGGAGAUCuCCgCCGUUg -3'
miRNA:   3'- -UGGACUa-GGcCCUCUAGuGGgGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 120069 0.67 0.832346
Target:  5'- -gCUGcgCCGGGaAGAcggaGCCCCCAa- -3'
miRNA:   3'- ugGACuaGGCCC-UCUag--UGGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 113620 0.67 0.806141
Target:  5'- cGCCUGccCCGGcGcuGGAuguugucUCGCCCCCGUUg -3'
miRNA:   3'- -UGGACuaGGCC-C--UCU-------AGUGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 33552 0.68 0.761831
Target:  5'- uGCCUGGcccuggugcuccUCCGGG-GGUCGCCgCguUCg -3'
miRNA:   3'- -UGGACU------------AGGCCCuCUAGUGGgGguAG- -5'
29091 3' -57.7 NC_006146.1 + 104220 0.7 0.634076
Target:  5'- aGCCgagGGUUCaGGGAGGUgcccCGCCCCCcUCa -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUA----GUGGGGGuAG- -5'
29091 3' -57.7 NC_006146.1 + 59719 0.67 0.824067
Target:  5'- aAUCUGGUCgGGGGGcgCAUCUCUcgCc -3'
miRNA:   3'- -UGGACUAGgCCCUCuaGUGGGGGuaG- -5'
29091 3' -57.7 NC_006146.1 + 138922 0.7 0.678239
Target:  5'- cGCCUGccUCCGGGAuGcAUCacucugagccacuaaGCCCCCAUUa -3'
miRNA:   3'- -UGGACu-AGGCCCU-C-UAG---------------UGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 90562 0.68 0.733321
Target:  5'- gGCCcggGAgaagacCCGGGAGAagGCCCCaGUCg -3'
miRNA:   3'- -UGGa--CUa-----GGCCCUCUagUGGGGgUAG- -5'
29091 3' -57.7 NC_006146.1 + 153309 0.67 0.824067
Target:  5'- cACCaGGcCCGGGccAGGUCGCCCagCAUCc -3'
miRNA:   3'- -UGGaCUaGGCCC--UCUAGUGGGg-GUAG- -5'
29091 3' -57.7 NC_006146.1 + 117250 0.67 0.832346
Target:  5'- gGCCgGggCCaGGGGGGUCGgcagguucCCCaCCAUCa -3'
miRNA:   3'- -UGGaCuaGG-CCCUCUAGU--------GGG-GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 121399 0.69 0.684222
Target:  5'- gGCCUcaacGUCCGGGAGAgUCugCCCaugaccaaCAUCa -3'
miRNA:   3'- -UGGAc---UAGGCCCUCU-AGugGGG--------GUAG- -5'
29091 3' -57.7 NC_006146.1 + 20539 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.