Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29091 | 3' | -57.7 | NC_006146.1 | + | 142369 | 0.67 | 0.815619 |
Target: 5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 18324 | 0.66 | 0.848368 |
Target: 5'- aACCUGGUCuCGGGcu-UCAUCUCCuUCu -3' miRNA: 3'- -UGGACUAG-GCCCucuAGUGGGGGuAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 83771 | 0.67 | 0.824067 |
Target: 5'- gGCCUGG--UGGGAGGUCGCagucgaCCCCGa- -3' miRNA: 3'- -UGGACUagGCCCUCUAGUG------GGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 125046 | 0.67 | 0.824067 |
Target: 5'- cACC-GGUCCcaaaaggggcucGGGGGAcgcCAUCCCCGUCu -3' miRNA: 3'- -UGGaCUAGG------------CCCUCUa--GUGGGGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 113634 | 0.67 | 0.82155 |
Target: 5'- aGCUUGAcggugcUCCGGGGGAUgGCCuugcugaccacgggCCCGUg -3' miRNA: 3'- -UGGACU------AGGCCCUCUAgUGG--------------GGGUAg -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 157758 | 0.67 | 0.815619 |
Target: 5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 151603 | 0.67 | 0.815619 |
Target: 5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 148525 | 0.67 | 0.815619 |
Target: 5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 145447 | 0.67 | 0.815619 |
Target: 5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 136760 | 0.66 | 0.856098 |
Target: 5'- cGCCgGGgcUCCGGGAGGcccggccgcgaUCcuCCCCCGUg -3' miRNA: 3'- -UGGaCU--AGGCCCUCU-----------AGu-GGGGGUAg -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 31753 | 0.66 | 0.856098 |
Target: 5'- cGCCccc-CCGGGGGAcgggaGCCCCCGUUc -3' miRNA: 3'- -UGGacuaGGCCCUCUag---UGGGGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 71606 | 0.66 | 0.863632 |
Target: 5'- cCCUGAccaggCGGGAGAUUAaCCCCAg- -3' miRNA: 3'- uGGACUag---GCCCUCUAGUgGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 121355 | 0.66 | 0.870964 |
Target: 5'- gGCCUGG-CCGGcGuGGccucCGCCCCCAg- -3' miRNA: 3'- -UGGACUaGGCC-CuCUa---GUGGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 117132 | 0.66 | 0.863632 |
Target: 5'- cCCUcGUCCGGcGAGAccuccgccCGCCgCCCGUCu -3' miRNA: 3'- uGGAcUAGGCC-CUCUa-------GUGG-GGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 157482 | 0.66 | 0.863632 |
Target: 5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3' miRNA: 3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 154404 | 0.66 | 0.863632 |
Target: 5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3' miRNA: 3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 151326 | 0.66 | 0.863632 |
Target: 5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3' miRNA: 3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 148248 | 0.66 | 0.863632 |
Target: 5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3' miRNA: 3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 145170 | 0.66 | 0.863632 |
Target: 5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3' miRNA: 3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 142092 | 0.66 | 0.863632 |
Target: 5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3' miRNA: 3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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