miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29091 3' -57.7 NC_006146.1 + 120721 1.09 0.002072
Target:  5'- cACCUGAUCCGGGAGAUCACCCCCAUCg -3'
miRNA:   3'- -UGGACUAGGCCCUCUAGUGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 116910 0.72 0.514212
Target:  5'- cCCUGAgggaaagCCGGGGGAUCgcagaccACCCCCu-- -3'
miRNA:   3'- uGGACUa------GGCCCUCUAG-------UGGGGGuag -5'
29091 3' -57.7 NC_006146.1 + 104116 0.72 0.534518
Target:  5'- cGCCUGGgcCCGGuGuccAGGUCGCaCCCCGUCu -3'
miRNA:   3'- -UGGACUa-GGCC-C---UCUAGUG-GGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 21793 0.71 0.613952
Target:  5'- aGCCcagcggGAUgCCGGGcGcgCGCCCCCGUUg -3'
miRNA:   3'- -UGGa-----CUA-GGCCCuCuaGUGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 104220 0.7 0.634076
Target:  5'- aGCCgagGGUUCaGGGAGGUgcccCGCCCCCcUCa -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUA----GUGGGGGuAG- -5'
29091 3' -57.7 NC_006146.1 + 77163 0.7 0.643133
Target:  5'- -gCUGAUCCGGGAcaacaucGAauUCACCUCCGa- -3'
miRNA:   3'- ugGACUAGGCCCU-------CU--AGUGGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 61529 0.7 0.664231
Target:  5'- gGCCUccgguGUCCGGGGGA-CGCCCUCGc- -3'
miRNA:   3'- -UGGAc----UAGGCCCUCUaGUGGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 80372 0.7 0.673243
Target:  5'- cACCgc-UCCGGGAGGuuguucaUCACCaCCAUCa -3'
miRNA:   3'- -UGGacuAGGCCCUCU-------AGUGGgGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 138922 0.7 0.678239
Target:  5'- cGCCUGccUCCGGGAuGcAUCacucugagccacuaaGCCCCCAUUa -3'
miRNA:   3'- -UGGACu-AGGCCCU-C-UAG---------------UGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 121399 0.69 0.684222
Target:  5'- gGCCUcaacGUCCGGGAGAgUCugCCCaugaccaaCAUCa -3'
miRNA:   3'- -UGGAc---UAGGCCCUCU-AGugGGG--------GUAG- -5'
29091 3' -57.7 NC_006146.1 + 136724 0.69 0.704046
Target:  5'- gGCCcagGGUCCggcuGGGGGcgCACCCCCc-- -3'
miRNA:   3'- -UGGa--CUAGG----CCCUCuaGUGGGGGuag -5'
29091 3' -57.7 NC_006146.1 + 32896 0.69 0.704046
Target:  5'- cACCagGGUCCggcuGGGGGcgCACCCCCc-- -3'
miRNA:   3'- -UGGa-CUAGG----CCCUCuaGUGGGGGuag -5'
29091 3' -57.7 NC_006146.1 + 104229 0.69 0.723636
Target:  5'- -gCUGGgcuUCCGGGucAUCACCCCCc-- -3'
miRNA:   3'- ugGACU---AGGCCCucUAGUGGGGGuag -5'
29091 3' -57.7 NC_006146.1 + 14383 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 17461 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 23617 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 90562 0.68 0.733321
Target:  5'- gGCCcggGAgaagacCCGGGAGAagGCCCCaGUCg -3'
miRNA:   3'- -UGGa--CUa-----GGCCCUCUagUGGGGgUAG- -5'
29091 3' -57.7 NC_006146.1 + 20539 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 26695 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 123314 0.68 0.761831
Target:  5'- cGCCgagugGAUCCGGGAcGUCugCggggCCGUCa -3'
miRNA:   3'- -UGGa----CUAGGCCCUcUAGugGg---GGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.