Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29091 | 3' | -57.7 | NC_006146.1 | + | 33552 | 0.68 | 0.761831 |
Target: 5'- uGCCUGGcccuggugcuccUCCGGG-GGUCGCCgCguUCg -3' miRNA: 3'- -UGGACU------------AGGCCCuCUAGUGGgGguAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 137053 | 0.68 | 0.771124 |
Target: 5'- gGCCUGGgguUCCGGG-GAcCACaCCCC-UCc -3' miRNA: 3'- -UGGACU---AGGCCCuCUaGUG-GGGGuAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 68938 | 0.68 | 0.780296 |
Target: 5'- gGCCUGGgcCCaGGAGAUCuCCgCCGUUg -3' miRNA: 3'- -UGGACUa-GGcCCUCUAGuGGgGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 408 | 0.68 | 0.780296 |
Target: 5'- cGCUgggGGUCCGGG-GAagccccccgcUCGCCCCUcggGUCg -3' miRNA: 3'- -UGGa--CUAGGCCCuCU----------AGUGGGGG---UAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 6637 | 0.68 | 0.780296 |
Target: 5'- aGCCUGAaagCaacgaGGGAGGUgGCCCaCCAg- -3' miRNA: 3'- -UGGACUa--Gg----CCCUCUAgUGGG-GGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 60809 | 0.68 | 0.780296 |
Target: 5'- gGCCUGGUCCGGaccGuuGUCaaccACCUCUAUCa -3' miRNA: 3'- -UGGACUAGGCC---CucUAG----UGGGGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 154681 | 0.68 | 0.780296 |
Target: 5'- gGCCUGGgagUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU---AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 98867 | 0.67 | 0.789341 |
Target: 5'- cGCCUGAUCCGGuaacuUCugCUCCAa- -3' miRNA: 3'- -UGGACUAGGCCcucu-AGugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 160426 | 0.67 | 0.798248 |
Target: 5'- gGCgaGGUagUGGGcGGUgGCCCCCAUCa -3' miRNA: 3'- -UGgaCUAg-GCCCuCUAgUGGGGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 113620 | 0.67 | 0.806141 |
Target: 5'- cGCCUGccCCGGcGcuGGAuguugucUCGCCCCCGUUg -3' miRNA: 3'- -UGGACuaGGCC-C--UCU-------AGUGGGGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 3842 | 0.67 | 0.80701 |
Target: 5'- aGCCggcgGGUaaGGGGGGUCGCCCUgGa- -3' miRNA: 3'- -UGGa---CUAggCCCUCUAGUGGGGgUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 142369 | 0.67 | 0.815619 |
Target: 5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 157758 | 0.67 | 0.815619 |
Target: 5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 151603 | 0.67 | 0.815619 |
Target: 5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 148525 | 0.67 | 0.815619 |
Target: 5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 145447 | 0.67 | 0.815619 |
Target: 5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3' miRNA: 3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 61947 | 0.67 | 0.815619 |
Target: 5'- cCCUGGUCCacGGGAcGGugcacauuuUCAgCCCCCAUUc -3' miRNA: 3'- uGGACUAGG--CCCU-CU---------AGU-GGGGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 113634 | 0.67 | 0.82155 |
Target: 5'- aGCUUGAcggugcUCCGGGGGAUgGCCuugcugaccacgggCCCGUg -3' miRNA: 3'- -UGGACU------AGGCCCUCUAgUGG--------------GGGUAg -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 125046 | 0.67 | 0.824067 |
Target: 5'- cACC-GGUCCcaaaaggggcucGGGGGAcgcCAUCCCCGUCu -3' miRNA: 3'- -UGGaCUAGG------------CCCUCUa--GUGGGGGUAG- -5' |
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29091 | 3' | -57.7 | NC_006146.1 | + | 83771 | 0.67 | 0.824067 |
Target: 5'- gGCCUGG--UGGGAGGUCGCagucgaCCCCGa- -3' miRNA: 3'- -UGGACUagGCCCUCUAGUG------GGGGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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