miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29091 3' -57.7 NC_006146.1 + 71606 0.66 0.863632
Target:  5'- cCCUGAccaggCGGGAGAUUAaCCCCAg- -3'
miRNA:   3'- uGGACUag---GCCCUCUAGUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 77163 0.7 0.643133
Target:  5'- -gCUGAUCCGGGAcaacaucGAauUCACCUCCGa- -3'
miRNA:   3'- ugGACUAGGCCCU-------CU--AGUGGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 80372 0.7 0.673243
Target:  5'- cACCgc-UCCGGGAGGuuguucaUCACCaCCAUCa -3'
miRNA:   3'- -UGGacuAGGCCCUCU-------AGUGGgGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 83771 0.67 0.824067
Target:  5'- gGCCUGG--UGGGAGGUCGCagucgaCCCCGa- -3'
miRNA:   3'- -UGGACUagGCCCUCUAGUG------GGGGUag -5'
29091 3' -57.7 NC_006146.1 + 90562 0.68 0.733321
Target:  5'- gGCCcggGAgaagacCCGGGAGAagGCCCCaGUCg -3'
miRNA:   3'- -UGGa--CUa-----GGCCCUCUagUGGGGgUAG- -5'
29091 3' -57.7 NC_006146.1 + 98867 0.67 0.789341
Target:  5'- cGCCUGAUCCGGuaacuUCugCUCCAa- -3'
miRNA:   3'- -UGGACUAGGCCcucu-AGugGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 104116 0.72 0.534518
Target:  5'- cGCCUGGgcCCGGuGuccAGGUCGCaCCCCGUCu -3'
miRNA:   3'- -UGGACUa-GGCC-C---UCUAGUG-GGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 104220 0.7 0.634076
Target:  5'- aGCCgagGGUUCaGGGAGGUgcccCGCCCCCcUCa -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUA----GUGGGGGuAG- -5'
29091 3' -57.7 NC_006146.1 + 104229 0.69 0.723636
Target:  5'- -gCUGGgcuUCCGGGucAUCACCCCCc-- -3'
miRNA:   3'- ugGACU---AGGCCCucUAGUGGGGGuag -5'
29091 3' -57.7 NC_006146.1 + 111304 0.66 0.856098
Target:  5'- gACCUGA--CGGGGGAcgcCGCCCuCCAgaUCg -3'
miRNA:   3'- -UGGACUagGCCCUCUa--GUGGG-GGU--AG- -5'
29091 3' -57.7 NC_006146.1 + 113620 0.67 0.806141
Target:  5'- cGCCUGccCCGGcGcuGGAuguugucUCGCCCCCGUUg -3'
miRNA:   3'- -UGGACuaGGCC-C--UCU-------AGUGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 113634 0.67 0.82155
Target:  5'- aGCUUGAcggugcUCCGGGGGAUgGCCuugcugaccacgggCCCGUg -3'
miRNA:   3'- -UGGACU------AGGCCCUCUAgUGG--------------GGGUAg -5'
29091 3' -57.7 NC_006146.1 + 116910 0.72 0.514212
Target:  5'- cCCUGAgggaaagCCGGGGGAUCgcagaccACCCCCu-- -3'
miRNA:   3'- uGGACUa------GGCCCUCUAG-------UGGGGGuag -5'
29091 3' -57.7 NC_006146.1 + 117132 0.66 0.863632
Target:  5'- cCCUcGUCCGGcGAGAccuccgccCGCCgCCCGUCu -3'
miRNA:   3'- uGGAcUAGGCC-CUCUa-------GUGG-GGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 117250 0.67 0.832346
Target:  5'- gGCCgGggCCaGGGGGGUCGgcagguucCCCaCCAUCa -3'
miRNA:   3'- -UGGaCuaGG-CCCUCUAGU--------GGG-GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 120069 0.67 0.832346
Target:  5'- -gCUGcgCCGGGaAGAcggaGCCCCCAa- -3'
miRNA:   3'- ugGACuaGGCCC-UCUag--UGGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 120721 1.09 0.002072
Target:  5'- cACCUGAUCCGGGAGAUCACCCCCAUCg -3'
miRNA:   3'- -UGGACUAGGCCCUCUAGUGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 121355 0.66 0.870964
Target:  5'- gGCCUGG-CCGGcGuGGccucCGCCCCCAg- -3'
miRNA:   3'- -UGGACUaGGCC-CuCUa---GUGGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 121399 0.69 0.684222
Target:  5'- gGCCUcaacGUCCGGGAGAgUCugCCCaugaccaaCAUCa -3'
miRNA:   3'- -UGGAc---UAGGCCCUCU-AGugGGG--------GUAG- -5'
29091 3' -57.7 NC_006146.1 + 121630 0.66 0.863632
Target:  5'- uGCCUGGaCC---AGAUCGCCCCCuUCu -3'
miRNA:   3'- -UGGACUaGGcccUCUAGUGGGGGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.