miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29091 3' -57.7 NC_006146.1 + 17461 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 169992 0.66 0.856098
Target:  5'- cGCCcggGGUCCcGGGGGG-CGgcgcgcggccuuCCCCCGUCu -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUaGU------------GGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 111304 0.66 0.856098
Target:  5'- gACCUGA--CGGGGGAcgcCGCCCuCCAgaUCg -3'
miRNA:   3'- -UGGACUagGCCCUCUa--GUGGG-GGU--AG- -5'
29091 3' -57.7 NC_006146.1 + 14383 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 137789 0.66 0.87024
Target:  5'- gGCCUGGUCCGccggauccgcuucGGGGGUC-CgCCgGUCc -3'
miRNA:   3'- -UGGACUAGGC-------------CCUCUAGuGgGGgUAG- -5'
29091 3' -57.7 NC_006146.1 + 121399 0.69 0.684222
Target:  5'- gGCCUcaacGUCCGGGAGAgUCugCCCaugaccaaCAUCa -3'
miRNA:   3'- -UGGAc---UAGGCCCUCU-AGugGGG--------GUAG- -5'
29091 3' -57.7 NC_006146.1 + 138922 0.7 0.678239
Target:  5'- cGCCUGccUCCGGGAuGcAUCacucugagccacuaaGCCCCCAUUa -3'
miRNA:   3'- -UGGACu-AGGCCCU-C-UAG---------------UGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 148248 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 123314 0.68 0.761831
Target:  5'- cGCCgagugGAUCCGGGAcGUCugCggggCCGUCa -3'
miRNA:   3'- -UGGa----CUAGGCCCUcUAGugGg---GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 137053 0.68 0.771124
Target:  5'- gGCCUGGgguUCCGGG-GAcCACaCCCC-UCc -3'
miRNA:   3'- -UGGACU---AGGCCCuCUaGUG-GGGGuAG- -5'
29091 3' -57.7 NC_006146.1 + 125046 0.67 0.824067
Target:  5'- cACC-GGUCCcaaaaggggcucGGGGGAcgcCAUCCCCGUCu -3'
miRNA:   3'- -UGGaCUAGG------------CCCUCUa--GUGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 83771 0.67 0.824067
Target:  5'- gGCCUGG--UGGGAGGUCGCagucgaCCCCGa- -3'
miRNA:   3'- -UGGACUagGCCCUCUAGUG------GGGGUag -5'
29091 3' -57.7 NC_006146.1 + 18324 0.66 0.848368
Target:  5'- aACCUGGUCuCGGGcu-UCAUCUCCuUCu -3'
miRNA:   3'- -UGGACUAG-GCCCucuAGUGGGGGuAG- -5'
29091 3' -57.7 NC_006146.1 + 136760 0.66 0.856098
Target:  5'- cGCCgGGgcUCCGGGAGGcccggccgcgaUCcuCCCCCGUg -3'
miRNA:   3'- -UGGaCU--AGGCCCUCU-----------AGu-GGGGGUAg -5'
29091 3' -57.7 NC_006146.1 + 151326 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 98867 0.67 0.789341
Target:  5'- cGCCUGAUCCGGuaacuUCugCUCCAa- -3'
miRNA:   3'- -UGGACUAGGCCcucu-AGugGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 60809 0.68 0.780296
Target:  5'- gGCCUGGUCCGGaccGuuGUCaaccACCUCUAUCa -3'
miRNA:   3'- -UGGACUAGGCC---CucUAG----UGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 154681 0.68 0.780296
Target:  5'- gGCCUGGgagUCCGGGGuguuGAgccugCugCCCCAg- -3'
miRNA:   3'- -UGGACU---AGGCCCU----CUa----GugGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 6637 0.68 0.780296
Target:  5'- aGCCUGAaagCaacgaGGGAGGUgGCCCaCCAg- -3'
miRNA:   3'- -UGGACUa--Gg----CCCUCUAgUGGG-GGUag -5'
29091 3' -57.7 NC_006146.1 + 408 0.68 0.780296
Target:  5'- cGCUgggGGUCCGGG-GAagccccccgcUCGCCCCUcggGUCg -3'
miRNA:   3'- -UGGa--CUAGGCCCuCU----------AGUGGGGG---UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.