miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29091 3' -57.7 NC_006146.1 + 408 0.68 0.780296
Target:  5'- cGCUgggGGUCCGGG-GAagccccccgcUCGCCCCUcggGUCg -3'
miRNA:   3'- -UGGa--CUAGGCCCuCU----------AGUGGGGG---UAG- -5'
29091 3' -57.7 NC_006146.1 + 3842 0.67 0.80701
Target:  5'- aGCCggcgGGUaaGGGGGGUCGCCCUgGa- -3'
miRNA:   3'- -UGGa---CUAggCCCUCUAGUGGGGgUag -5'
29091 3' -57.7 NC_006146.1 + 6637 0.68 0.780296
Target:  5'- aGCCUGAaagCaacgaGGGAGGUgGCCCaCCAg- -3'
miRNA:   3'- -UGGACUa--Gg----CCCUCUAgUGGG-GGUag -5'
29091 3' -57.7 NC_006146.1 + 14383 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 17461 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 18324 0.66 0.848368
Target:  5'- aACCUGGUCuCGGGcu-UCAUCUCCuUCu -3'
miRNA:   3'- -UGGACUAG-GCCCucuAGUGGGGGuAG- -5'
29091 3' -57.7 NC_006146.1 + 20539 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 21793 0.71 0.613952
Target:  5'- aGCCcagcggGAUgCCGGGcGcgCGCCCCCGUUg -3'
miRNA:   3'- -UGGa-----CUA-GGCCCuCuaGUGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 23617 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 26695 0.68 0.733321
Target:  5'- cCCUGucuagggCCGGGAGAggCAgCCCCGa- -3'
miRNA:   3'- uGGACua-----GGCCCUCUa-GUgGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 31753 0.66 0.856098
Target:  5'- cGCCccc-CCGGGGGAcgggaGCCCCCGUUc -3'
miRNA:   3'- -UGGacuaGGCCCUCUag---UGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 32896 0.69 0.704046
Target:  5'- cACCagGGUCCggcuGGGGGcgCACCCCCc-- -3'
miRNA:   3'- -UGGa-CUAGG----CCCUCuaGUGGGGGuag -5'
29091 3' -57.7 NC_006146.1 + 33552 0.68 0.761831
Target:  5'- uGCCUGGcccuggugcuccUCCGGG-GGUCGCCgCguUCg -3'
miRNA:   3'- -UGGACU------------AGGCCCuCUAGUGGgGguAG- -5'
29091 3' -57.7 NC_006146.1 + 38958 0.66 0.863632
Target:  5'- gGCCuUGGcaUCCGGGuGG--GCCCCCAg- -3'
miRNA:   3'- -UGG-ACU--AGGCCCuCUagUGGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 50143 0.66 0.878089
Target:  5'- uUUUGAUCCGGGAGAuuuUCGCgUCUCGa- -3'
miRNA:   3'- uGGACUAGGCCCUCU---AGUG-GGGGUag -5'
29091 3' -57.7 NC_006146.1 + 59719 0.67 0.824067
Target:  5'- aAUCUGGUCgGGGGGcgCAUCUCUcgCc -3'
miRNA:   3'- -UGGACUAGgCCCUCuaGUGGGGGuaG- -5'
29091 3' -57.7 NC_006146.1 + 60809 0.68 0.780296
Target:  5'- gGCCUGGUCCGGaccGuuGUCaaccACCUCUAUCa -3'
miRNA:   3'- -UGGACUAGGCC---CucUAG----UGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 61529 0.7 0.664231
Target:  5'- gGCCUccgguGUCCGGGGGA-CGCCCUCGc- -3'
miRNA:   3'- -UGGAc----UAGGCCCUCUaGUGGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 61947 0.67 0.815619
Target:  5'- cCCUGGUCCacGGGAcGGugcacauuuUCAgCCCCCAUUc -3'
miRNA:   3'- uGGACUAGG--CCCU-CU---------AGU-GGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 68938 0.68 0.780296
Target:  5'- gGCCUGGgcCCaGGAGAUCuCCgCCGUUg -3'
miRNA:   3'- -UGGACUa-GGcCCUCUAGuGGgGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.