miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29091 3' -57.7 NC_006146.1 + 169992 0.66 0.856098
Target:  5'- cGCCcggGGUCCcGGGGGG-CGgcgcgcggccuuCCCCCGUCu -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUaGU------------GGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 169060 0.66 0.856098
Target:  5'- cGCCcggGGUCCcGGGGGG-CGgcgcgcggccuuCCCCCGUCu -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUaGU------------GGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 168128 0.66 0.856098
Target:  5'- cGCCcggGGUCCcGGGGGG-CGgcgcgcggccuuCCCCCGUCu -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUaGU------------GGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 167196 0.66 0.856098
Target:  5'- cGCCcggGGUCCcGGGGGG-CGgcgcgcggccuuCCCCCGUCu -3'
miRNA:   3'- -UGGa--CUAGG-CCCUCUaGU------------GGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 160426 0.67 0.798248
Target:  5'- gGCgaGGUagUGGGcGGUgGCCCCCAUCa -3'
miRNA:   3'- -UGgaCUAg-GCCCuCUAgUGGGGGUAG- -5'
29091 3' -57.7 NC_006146.1 + 157758 0.67 0.815619
Target:  5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3'
miRNA:   3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 157482 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 154681 0.68 0.780296
Target:  5'- gGCCUGGgagUCCGGGGuguuGAgccugCugCCCCAg- -3'
miRNA:   3'- -UGGACU---AGGCCCU----CUa----GugGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 154404 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 153749 0.67 0.832346
Target:  5'- cACUUGAaggcUCCaGGGAGggCcauGCCCaCCGUCa -3'
miRNA:   3'- -UGGACU----AGG-CCCUCuaG---UGGG-GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 153309 0.67 0.824067
Target:  5'- cACCaGGcCCGGGccAGGUCGCCCagCAUCc -3'
miRNA:   3'- -UGGaCUaGGCCC--UCUAGUGGGg-GUAG- -5'
29091 3' -57.7 NC_006146.1 + 151603 0.67 0.815619
Target:  5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3'
miRNA:   3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 151326 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 148525 0.67 0.815619
Target:  5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3'
miRNA:   3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 148248 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 145447 0.67 0.815619
Target:  5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3'
miRNA:   3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 145170 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 142369 0.67 0.815619
Target:  5'- gGCCUGGgaggUCCGGGGuguuGAgccugCugCCCCAg- -3'
miRNA:   3'- -UGGACU----AGGCCCU----CUa----GugGGGGUag -5'
29091 3' -57.7 NC_006146.1 + 142092 0.66 0.863632
Target:  5'- gGCCUGGgacCCgGGGAGG-CACCCugaggugcuccuCCGUCc -3'
miRNA:   3'- -UGGACUa--GG-CCCUCUaGUGGG------------GGUAG- -5'
29091 3' -57.7 NC_006146.1 + 138922 0.7 0.678239
Target:  5'- cGCCUGccUCCGGGAuGcAUCacucugagccacuaaGCCCCCAUUa -3'
miRNA:   3'- -UGGACu-AGGCCCU-C-UAG---------------UGGGGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.