miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29098 3' -66.2 NC_006146.1 + 169666 0.66 0.51515
Target:  5'- uGGGCGUGGcGGGCGCgCGuggcccGCCCCCg-- -3'
miRNA:   3'- -CCCGUGCUcCCCGCG-GC------CGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 2751 0.66 0.488289
Target:  5'- cGGGagcagACGGGGGaaggccgcGCGCCGcCCCCCgggACc -3'
miRNA:   3'- -CCCg----UGCUCCC--------CGCGGCcGGGGGa--UG- -5'
29098 3' -66.2 NC_006146.1 + 1819 0.66 0.488289
Target:  5'- cGGGagcagACGGGGGaaggccgcGCGCCGcCCCCCgggACc -3'
miRNA:   3'- -CCCg----UGCUCCC--------CGCGGCcGGGGGa--UG- -5'
29098 3' -66.2 NC_006146.1 + 887 0.66 0.488289
Target:  5'- cGGGagcagACGGGGGaaggccgcGCGCCGcCCCCCgggACc -3'
miRNA:   3'- -CCCg----UGCUCCC--------CGCGGCcGGGGGa--UG- -5'
29098 3' -66.2 NC_006146.1 + 114316 0.66 0.479481
Target:  5'- cGGCgGCGGGcucGGCGcCCGGCCgCCCcugACg -3'
miRNA:   3'- cCCG-UGCUCc--CCGC-GGCCGG-GGGa--UG- -5'
29098 3' -66.2 NC_006146.1 + 91771 0.66 0.479481
Target:  5'- uGGGUGCcuGGGGUGCCGuGCUggcacccgcgggCCUUACg -3'
miRNA:   3'- -CCCGUGcuCCCCGCGGC-CGG------------GGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 9464 0.66 0.479481
Target:  5'- uGGGCGC--GGGGU-CCGcGCCCUCUGg -3'
miRNA:   3'- -CCCGUGcuCCCCGcGGC-CGGGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 73047 0.66 0.470752
Target:  5'- cGGCcCG-GGGuCGgCGGCCCCCUc- -3'
miRNA:   3'- cCCGuGCuCCCcGCgGCCGGGGGAug -5'
29098 3' -66.2 NC_006146.1 + 50735 0.66 0.470752
Target:  5'- cGGGgGCGAcGGGGCGUCGGgaagggggccgUCCUCg-- -3'
miRNA:   3'- -CCCgUGCU-CCCCGCGGCC-----------GGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 3683 0.66 0.488289
Target:  5'- cGGGagcagACGGGGGaaggccgcGCGCCGcCCCCCgggACc -3'
miRNA:   3'- -CCCg----UGCUCCC--------CGCGGCcGGGGGa--UG- -5'
29098 3' -66.2 NC_006146.1 + 167075 0.66 0.488289
Target:  5'- aGGGCAgCG-GGGGUGCCccGCCUggCCUGa -3'
miRNA:   3'- -CCCGU-GCuCCCCGCGGc-CGGG--GGAUg -5'
29098 3' -66.2 NC_006146.1 + 118965 0.66 0.491833
Target:  5'- uGGCGCGcagaccgcaccGGGGcCGCCcgucggugccucggaGGCCCCCgccgACg -3'
miRNA:   3'- cCCGUGCu----------CCCC-GCGG---------------CCGGGGGa---UG- -5'
29098 3' -66.2 NC_006146.1 + 40485 0.66 0.506127
Target:  5'- gGGGCA-GAGGGGcCGCgaaaGGCagcggaCUCUGCc -3'
miRNA:   3'- -CCCGUgCUCCCC-GCGg---CCGg-----GGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 44798 0.66 0.505228
Target:  5'- gGGGCGCagcgucuaauacuGGGaccucuguaGGGgGCCGGCgCCCCUc- -3'
miRNA:   3'- -CCCGUG-------------CUC---------CCCgCGGCCG-GGGGAug -5'
29098 3' -66.2 NC_006146.1 + 66710 0.66 0.497172
Target:  5'- cGGCccCGuGGGGGCGCagaCGGCCCUgcgacuggauCUGCa -3'
miRNA:   3'- cCCGu-GC-UCCCCGCG---GCCGGGG----------GAUG- -5'
29098 3' -66.2 NC_006146.1 + 47379 0.66 0.497172
Target:  5'- aGGGCAUGAGguccuacggguuGGaGCGuCUGGCCgCCaUGCu -3'
miRNA:   3'- -CCCGUGCUC------------CC-CGC-GGCCGGgGG-AUG- -5'
29098 3' -66.2 NC_006146.1 + 43634 0.66 0.497172
Target:  5'- uGGGCG-GcGGGGCG-UGGCCgCCUGg -3'
miRNA:   3'- -CCCGUgCuCCCCGCgGCCGGgGGAUg -5'
29098 3' -66.2 NC_006146.1 + 43208 0.66 0.497172
Target:  5'- aGGCGgGGauGGGGCGCUGcuggugagaggaGCCCCCc-- -3'
miRNA:   3'- cCCGUgCU--CCCCGCGGC------------CGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 77961 0.66 0.49628
Target:  5'- uGGGC-CGGagccgguggccuuGGaGGUGCCGGUCCUCUc- -3'
miRNA:   3'- -CCCGuGCU-------------CC-CCGCGGCCGGGGGAug -5'
29098 3' -66.2 NC_006146.1 + 126492 0.66 0.491833
Target:  5'- cGGGagccccuCGAGGaaGGCGCCGugcccggccccacacGCCCCCcggGCg -3'
miRNA:   3'- -CCCgu-----GCUCC--CCGCGGC---------------CGGGGGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.