miRNA display CGI


Results 1 - 20 of 257 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29098 3' -66.2 NC_006146.1 + 585 0.71 0.2487
Target:  5'- gGGGC-CG-GGGGCG-CGGCCcggcgccagCCCUGCc -3'
miRNA:   3'- -CCCGuGCuCCCCGCgGCCGG---------GGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 887 0.66 0.488289
Target:  5'- cGGGagcagACGGGGGaaggccgcGCGCCGcCCCCCgggACc -3'
miRNA:   3'- -CCCg----UGCUCCC--------CGCGGCcGGGGGa--UG- -5'
29098 3' -66.2 NC_006146.1 + 1516 0.71 0.2487
Target:  5'- gGGGC-CG-GGGGCG-CGGCCcggcgccagCCCUGCc -3'
miRNA:   3'- -CCCGuGCuCCCCGCgGCCGG---------GGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 1819 0.66 0.488289
Target:  5'- cGGGagcagACGGGGGaaggccgcGCGCCGcCCCCCgggACc -3'
miRNA:   3'- -CCCg----UGCUCCC--------CGCGGCcGGGGGa--UG- -5'
29098 3' -66.2 NC_006146.1 + 2448 0.71 0.2487
Target:  5'- gGGGC-CG-GGGGCG-CGGCCcggcgccagCCCUGCc -3'
miRNA:   3'- -CCCGuGCuCCCCGCgGCCGG---------GGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 2751 0.66 0.488289
Target:  5'- cGGGagcagACGGGGGaaggccgcGCGCCGcCCCCCgggACc -3'
miRNA:   3'- -CCCg----UGCUCCC--------CGCGGCcGGGGGa--UG- -5'
29098 3' -66.2 NC_006146.1 + 3380 0.71 0.2487
Target:  5'- gGGGC-CG-GGGGCG-CGGCCcggcgccagCCCUGCc -3'
miRNA:   3'- -CCCGuGCuCCCCGCgGCCGG---------GGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 3683 0.66 0.488289
Target:  5'- cGGGagcagACGGGGGaaggccgcGCGCCGcCCCCCgggACc -3'
miRNA:   3'- -CCCg----UGCUCCC--------CGCGGCcGGGGGa--UG- -5'
29098 3' -66.2 NC_006146.1 + 3801 0.71 0.2487
Target:  5'- gGGGCACGcGGGGGaugGCCacGCCCCCc-- -3'
miRNA:   3'- -CCCGUGC-UCCCCg--CGGc-CGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 4515 0.67 0.428382
Target:  5'- cGGGCcaGCGGGGGGUgaccaucucgguGCCGGCagCCgCCgACu -3'
miRNA:   3'- -CCCG--UGCUCCCCG------------CGGCCG--GG-GGaUG- -5'
29098 3' -66.2 NC_006146.1 + 4864 0.68 0.358142
Target:  5'- gGGGCAgGGGcGGGgGCCacaGGCaCCCCcgaUGCc -3'
miRNA:   3'- -CCCGUgCUC-CCCgCGG---CCG-GGGG---AUG- -5'
29098 3' -66.2 NC_006146.1 + 9464 0.66 0.479481
Target:  5'- uGGGCGC--GGGGU-CCGcGCCCUCUGg -3'
miRNA:   3'- -CCCGUGcuCCCCGcGGC-CGGGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 11818 0.67 0.428382
Target:  5'- -uGCAgGAGGGGaagGUgGGaCCCCUUGCg -3'
miRNA:   3'- ccCGUgCUCCCCg--CGgCC-GGGGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 14030 0.68 0.358142
Target:  5'- aGGGCagggagcagGCGGGGGcaggcgcaaGCGCCGGCUggCUGCg -3'
miRNA:   3'- -CCCG---------UGCUCCC---------CGCGGCCGGggGAUG- -5'
29098 3' -66.2 NC_006146.1 + 14107 0.67 0.453541
Target:  5'- aGGGCGgGAugucGGGGCuGCUGGCggcggCCUACa -3'
miRNA:   3'- -CCCGUgCU----CCCCG-CGGCCGgg---GGAUG- -5'
29098 3' -66.2 NC_006146.1 + 14680 0.7 0.290046
Target:  5'- cGGC-CGAgGGGGC-CCGcGUCUCCUGCa -3'
miRNA:   3'- cCCGuGCU-CCCCGcGGC-CGGGGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 15025 0.66 0.469883
Target:  5'- -uGCcaGgGAGGGGCGCCuggccagGGCCCgccgggCCUGCg -3'
miRNA:   3'- ccCG--UgCUCCCCGCGG-------CCGGG------GGAUG- -5'
29098 3' -66.2 NC_006146.1 + 15301 0.67 0.445065
Target:  5'- gGGGgAgGAGGGGCcggagGCCaGCCCCg--- -3'
miRNA:   3'- -CCCgUgCUCCCCG-----CGGcCGGGGgaug -5'
29098 3' -66.2 NC_006146.1 + 18951 0.72 0.227336
Target:  5'- aGGGCAUGuGGuGCGCCagcGGCCCCUa-- -3'
miRNA:   3'- -CCCGUGCuCCcCGCGG---CCGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 19588 0.72 0.217248
Target:  5'- cGGCGCGAGGacaGCuCCuGGCCCuCCUACa -3'
miRNA:   3'- cCCGUGCUCCc--CGcGG-CCGGG-GGAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.