miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29098 3' -66.2 NC_006146.1 + 126074 1.11 0.000331
Target:  5'- cGGGCACGAGGGGCGCCGGCCCCCUACa -3'
miRNA:   3'- -CCCGUGCUCCCCGCGGCCGGGGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 151478 0.83 0.038458
Target:  5'- gGGGCucu-GGGGCGCCGGUCCCCUGg -3'
miRNA:   3'- -CCCGugcuCCCCGCGGCCGGGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 142244 0.83 0.038458
Target:  5'- gGGGCucu-GGGGCGCCGGUCCCCUGg -3'
miRNA:   3'- -CCCGugcuCCCCGCGGCCGGGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 154556 0.83 0.038458
Target:  5'- gGGGCucu-GGGGCGCCGGUCCCCUGg -3'
miRNA:   3'- -CCCGugcuCCCCGCGGCCGGGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 157634 0.83 0.038458
Target:  5'- gGGGCucu-GGGGCGCCGGUCCCCUGg -3'
miRNA:   3'- -CCCGugcuCCCCGCGGCCGGGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 148400 0.83 0.038458
Target:  5'- gGGGCucu-GGGGCGCCGGUCCCCUGg -3'
miRNA:   3'- -CCCGugcuCCCCGCGGCCGGGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 145322 0.83 0.038458
Target:  5'- gGGGCucu-GGGGCGCCGGUCCCCUGg -3'
miRNA:   3'- -CCCGugcuCCCCGCGGCCGGGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 42380 0.8 0.058996
Target:  5'- aGGGUggGCGAGGGGCGCCccagGGCCaCCCcgACg -3'
miRNA:   3'- -CCCG--UGCUCCCCGCGG----CCGG-GGGa-UG- -5'
29098 3' -66.2 NC_006146.1 + 166026 0.8 0.06359
Target:  5'- uGGGCAUcGGGGGUGCCuguGGCCCCCg-- -3'
miRNA:   3'- -CCCGUGcUCCCCGCGG---CCGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 170486 0.77 0.09926
Target:  5'- gGGGCgaGCGGGGGGCuuccCCGGaCCCCCaGCg -3'
miRNA:   3'- -CCCG--UGCUCCCCGc---GGCC-GGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 103393 0.76 0.120591
Target:  5'- aGGGCGCcugccaguGGGGGGCGUCGuGCuCCCCUcGCu -3'
miRNA:   3'- -CCCGUG--------CUCCCCGCGGC-CG-GGGGA-UG- -5'
29098 3' -66.2 NC_006146.1 + 49189 0.75 0.136016
Target:  5'- uGGUACGGcGGGUGuuGGCCCCCUc- -3'
miRNA:   3'- cCCGUGCUcCCCGCggCCGGGGGAug -5'
29098 3' -66.2 NC_006146.1 + 34963 0.75 0.136016
Target:  5'- gGGGCAgCGgacccAGGGGCacCCGGCCCCCgGCc -3'
miRNA:   3'- -CCCGU-GC-----UCCCCGc-GGCCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 34313 0.75 0.136016
Target:  5'- gGGGCAgCGgacccAGGGGCacCCGGCCCCCgGCc -3'
miRNA:   3'- -CCCGU-GC-----UCCCCGc-GGCCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 34220 0.75 0.136016
Target:  5'- gGGGCAgCGgacccAGGGGCacCCGGCCCCCgGCc -3'
miRNA:   3'- -CCCGU-GC-----UCCCCGc-GGCCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 35521 0.75 0.136016
Target:  5'- gGGGCAgCGgacccAGGGGCacCCGGCCCCCgGCc -3'
miRNA:   3'- -CCCGU-GC-----UCCCCGc-GGCCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 34685 0.75 0.136016
Target:  5'- gGGGCAgCGgacccAGGGGCacCCGGCCCCCgGCc -3'
miRNA:   3'- -CCCGU-GC-----UCCCCGc-GGCCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 34871 0.75 0.136016
Target:  5'- gGGGCAgCGgacccAGGGGCacCCGGCCCCCgGCc -3'
miRNA:   3'- -CCCGU-GC-----UCCCCGc-GGCCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 35149 0.75 0.136016
Target:  5'- gGGGCAgCGgacccAGGGGCacCCGGCCCCCgGCc -3'
miRNA:   3'- -CCCGU-GC-----UCCCCGc-GGCCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 35428 0.75 0.136016
Target:  5'- gGGGCAgCGgacccAGGGGCacCCGGCCCCCgGCc -3'
miRNA:   3'- -CCCGU-GC-----UCCCCGc-GGCCGGGGGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.