miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29098 3' -66.2 NC_006146.1 + 126074 1.11 0.000331
Target:  5'- cGGGCACGAGGGGCGCCGGCCCCCUACa -3'
miRNA:   3'- -CCCGUGCUCCCCGCGGCCGGGGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 55483 0.69 0.322756
Target:  5'- cGGGCgagaACGAGGcccGGcCGCCagcuGCCUCCUGCa -3'
miRNA:   3'- -CCCG----UGCUCC---CC-GCGGc---CGGGGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 158821 0.69 0.343668
Target:  5'- aGGCACacggccGGGGC-CCGGCCCUCg-- -3'
miRNA:   3'- cCCGUGcu----CCCCGcGGCCGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 169666 0.66 0.51515
Target:  5'- uGGGCGUGGcGGGCGCgCGuggcccGCCCCCg-- -3'
miRNA:   3'- -CCCGUGCUcCCCGCG-GC------CGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 135121 0.72 0.207546
Target:  5'- uGGGUuugcuccgGCGGGGGGUgGCCGGgCCgCUGCc -3'
miRNA:   3'- -CCCG--------UGCUCCCCG-CGGCCgGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 45038 0.72 0.222243
Target:  5'- aGGGagaGAGGccGGgGCCGGCUCCCUAg -3'
miRNA:   3'- -CCCgugCUCC--CCgCGGCCGGGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 109204 0.72 0.227336
Target:  5'- aGGGCugGAcuGGCGgCGGUCCCCa-- -3'
miRNA:   3'- -CCCGugCUccCCGCgGCCGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 56813 0.71 0.243208
Target:  5'- uGGCGgGcGGGGCuuCUGGCCCCCgagGCg -3'
miRNA:   3'- cCCGUgCuCCCCGc-GGCCGGGGGa--UG- -5'
29098 3' -66.2 NC_006146.1 + 129129 0.71 0.259992
Target:  5'- cGGGCGCcc-GGGCGCagGGCCUCCgGCg -3'
miRNA:   3'- -CCCGUGcucCCCGCGg-CCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 100167 0.69 0.316
Target:  5'- cGGCguccGCGAGGGGgGCaauaaGCCCCCcGCu -3'
miRNA:   3'- cCCG----UGCUCCCCgCGgc---CGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 160424 0.7 0.271698
Target:  5'- aGGGCGagguAGuGGGCGgUGGCCCCCa-- -3'
miRNA:   3'- -CCCGUgc--UC-CCCGCgGCCGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 40130 0.71 0.259417
Target:  5'- uGGGacaccguCugGAGGGGgGCUGGCCauaCCUGg -3'
miRNA:   3'- -CCC-------GugCUCCCCgCGGCCGGg--GGAUg -5'
29098 3' -66.2 NC_006146.1 + 166026 0.8 0.06359
Target:  5'- uGGGCAUcGGGGGUGCCuguGGCCCCCg-- -3'
miRNA:   3'- -CCCGUGcUCCCCGCGG---CCGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 155576 0.7 0.283824
Target:  5'- gGGGCGCccgccAGGGGCacaccgggGCUGGCCUCCgGCc -3'
miRNA:   3'- -CCCGUGc----UCCCCG--------CGGCCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 170486 0.77 0.09926
Target:  5'- gGGGCgaGCGGGGGGCuuccCCGGaCCCCCaGCg -3'
miRNA:   3'- -CCCG--UGCUCCCCGc---GGCC-GGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 55150 0.71 0.258272
Target:  5'- gGGGCACGAuaaagaugcgcaggGGGGUGaCCGcGUCCCaggCUGCg -3'
miRNA:   3'- -CCCGUGCU--------------CCCCGC-GGC-CGGGG---GAUG- -5'
29098 3' -66.2 NC_006146.1 + 149945 0.69 0.307377
Target:  5'- cGGGguUGAGGGGCGCCcaGGCguugggagugggggCCagggCCUGCa -3'
miRNA:   3'- -CCCguGCUCCCCGCGG--CCG--------------GG----GGAUG- -5'
29098 3' -66.2 NC_006146.1 + 99403 0.69 0.32962
Target:  5'- cGGC-CaGGGGGGUGCCGGCaacgCCCa-- -3'
miRNA:   3'- cCCGuG-CUCCCCGCGGCCGg---GGGaug -5'
29098 3' -66.2 NC_006146.1 + 55693 0.73 0.193695
Target:  5'- cGGGCACGgccgccgccgGGGGGCucugcccgccGCUGGCCUCCgcgUACa -3'
miRNA:   3'- -CCCGUGC----------UCCCCG----------CGGCCGGGGG---AUG- -5'
29098 3' -66.2 NC_006146.1 + 48274 0.72 0.222243
Target:  5'- uGGCGCGAaaGaGGGCcCCGGCCUCCUcCg -3'
miRNA:   3'- cCCGUGCU--C-CCCGcGGCCGGGGGAuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.