miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2910 5' -52.7 NC_001493.1 + 85233 0.66 0.980145
Target:  5'- uUCCACGAaCgCguGGCCCGUggggauaACGUCCg -3'
miRNA:   3'- -GGGUGUUgGgGguUUGGGUA-------UGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 62417 0.66 0.982456
Target:  5'- cCUCGC--CCCCCGuGCCCGUGgcCGUggCCg -3'
miRNA:   3'- -GGGUGuuGGGGGUuUGGGUAU--GCA--GG- -5'
2910 5' -52.7 NC_001493.1 + 94876 0.66 0.970112
Target:  5'- aUCAUAACCCgaAAACCCG-ACGaUCCc -3'
miRNA:   3'- gGGUGUUGGGggUUUGGGUaUGC-AGG- -5'
2910 5' -52.7 NC_001493.1 + 123025 0.66 0.972973
Target:  5'- -aCACGAgCCCCAucACCCGUucgGUUCg -3'
miRNA:   3'- ggGUGUUgGGGGUu-UGGGUAug-CAGG- -5'
2910 5' -52.7 NC_001493.1 + 132014 0.66 0.982456
Target:  5'- gCCCAUcuACCCCUAcggcuccCCCAUgggggcacACGUCUa -3'
miRNA:   3'- -GGGUGu-UGGGGGUuu-----GGGUA--------UGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 29488 0.66 0.980364
Target:  5'- gCCACgAGCUCCUucACCCGuUGC-UCCa -3'
miRNA:   3'- gGGUG-UUGGGGGuuUGGGU-AUGcAGG- -5'
2910 5' -52.7 NC_001493.1 + 50419 0.66 0.97563
Target:  5'- gCCCAaucCCCCCAGagauGCCC--ACGaCCg -3'
miRNA:   3'- -GGGUguuGGGGGUU----UGGGuaUGCaGG- -5'
2910 5' -52.7 NC_001493.1 + 7471 0.66 0.972973
Target:  5'- -aCACGAgCCCCAucACCCGUucgGUUCg -3'
miRNA:   3'- ggGUGUUgGGGGUu-UGGGUAug-CAGG- -5'
2910 5' -52.7 NC_001493.1 + 42729 0.66 0.972973
Target:  5'- cCUCACAACCggcaccaacaCCCGAGCCCGc-CGUgaagCCa -3'
miRNA:   3'- -GGGUGUUGG----------GGGUUUGGGUauGCA----GG- -5'
2910 5' -52.7 NC_001493.1 + 126829 0.66 0.97563
Target:  5'- -gCGCGACCgCCGGACCgCGUACacauguauauguGUCUg -3'
miRNA:   3'- ggGUGUUGGgGGUUUGG-GUAUG------------CAGG- -5'
2910 5' -52.7 NC_001493.1 + 16460 0.66 0.982456
Target:  5'- gCCCAUcuACCCCUAcggcuccCCCAUgggggcacACGUCUa -3'
miRNA:   3'- -GGGUGu-UGGGGGUuu-----GGGUA--------UGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 90456 0.66 0.980364
Target:  5'- gCUCAUGA-CCCCGAGCgCAc-CGUCCa -3'
miRNA:   3'- -GGGUGUUgGGGGUUUGgGUauGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 111672 0.66 0.978091
Target:  5'- aCCCGCGAgCaCCAGcCCCGguCGUCUg -3'
miRNA:   3'- -GGGUGUUgGgGGUUuGGGUauGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 44036 0.66 0.980364
Target:  5'- cCCCAgGGCCCgaaauaCCcGGCCCcucuUGUCCa -3'
miRNA:   3'- -GGGUgUUGGG------GGuUUGGGuau-GCAGG- -5'
2910 5' -52.7 NC_001493.1 + 50543 0.66 0.97563
Target:  5'- aCCCACGGCCgC--GACUCGUACcacaUCCa -3'
miRNA:   3'- -GGGUGUUGGgGguUUGGGUAUGc---AGG- -5'
2910 5' -52.7 NC_001493.1 + 11198 0.66 0.982456
Target:  5'- gCCACGGCCgUCAAAucCCCGUGCu--- -3'
miRNA:   3'- gGGUGUUGGgGGUUU--GGGUAUGcagg -5'
2910 5' -52.7 NC_001493.1 + 9774 0.66 0.982456
Target:  5'- aCgACGACCCCgGAgucACCCGc-CGUCa -3'
miRNA:   3'- gGgUGUUGGGGgUU---UGGGUauGCAGg -5'
2910 5' -52.7 NC_001493.1 + 27877 0.66 0.972973
Target:  5'- gCUCACGACCaCCGgcguacGAUCCGUGguaGUCCg -3'
miRNA:   3'- -GGGUGUUGGgGGU------UUGGGUAUg--CAGG- -5'
2910 5' -52.7 NC_001493.1 + 56284 0.66 0.97563
Target:  5'- aUCACuuCCCCgAGgcGCUCGUugGUCg -3'
miRNA:   3'- gGGUGuuGGGGgUU--UGGGUAugCAGg -5'
2910 5' -52.7 NC_001493.1 + 90300 0.66 0.982456
Target:  5'- uCUCA-GGCCCCUGAgguaACCCuuguccGCGUCCg -3'
miRNA:   3'- -GGGUgUUGGGGGUU----UGGGua----UGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.