miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2910 5' -52.7 NC_001493.1 + 94034 0.7 0.885966
Target:  5'- gCCCGCAACCCauCCucGGCCaCGUGCGa-- -3'
miRNA:   3'- -GGGUGUUGGG--GGu-UUGG-GUAUGCagg -5'
2910 5' -52.7 NC_001493.1 + 103155 0.72 0.796311
Target:  5'- gCCUACu-CCCCCAgggucuggauAGCCCAgcacACGUUCg -3'
miRNA:   3'- -GGGUGuuGGGGGU----------UUGGGUa---UGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 75977 0.72 0.804491
Target:  5'- aCCC-CGAaaaUCCCAAGCUCGUccgccacACGUCCg -3'
miRNA:   3'- -GGGuGUUg--GGGGUUUGGGUA-------UGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 102304 0.71 0.823059
Target:  5'- gUCGCGACCCCCcGACCCGccgAgGcCCc -3'
miRNA:   3'- gGGUGUUGGGGGuUUGGGUa--UgCaGG- -5'
2910 5' -52.7 NC_001493.1 + 101218 0.71 0.840009
Target:  5'- aCCCAuCGACCuCCCAAACCagauCAUcACGggCCg -3'
miRNA:   3'- -GGGU-GUUGG-GGGUUUGG----GUA-UGCa-GG- -5'
2910 5' -52.7 NC_001493.1 + 31665 0.7 0.856181
Target:  5'- aCCGCGACCaCCGGcACCuCAU-CGUCCc -3'
miRNA:   3'- gGGUGUUGGgGGUU-UGG-GUAuGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 93674 0.7 0.871516
Target:  5'- gCCCGCcgauuuACCCCCGggUCCGUucACGgUCg -3'
miRNA:   3'- -GGGUGu-----UGGGGGUuuGGGUA--UGC-AGg -5'
2910 5' -52.7 NC_001493.1 + 33932 0.7 0.871516
Target:  5'- gCC-CAACUCCCGAGCCCcgaGCaUCCc -3'
miRNA:   3'- gGGuGUUGGGGGUUUGGGua-UGcAGG- -5'
2910 5' -52.7 NC_001493.1 + 51344 0.7 0.885966
Target:  5'- gUCCGCuccaaagaauuGACCCCCu--CCCGUgGCgGUCCa -3'
miRNA:   3'- -GGGUG-----------UUGGGGGuuuGGGUA-UG-CAGG- -5'
2910 5' -52.7 NC_001493.1 + 53372 0.72 0.796311
Target:  5'- -aCACAACUUCCGAAUCCAcggaGUCCa -3'
miRNA:   3'- ggGUGUUGGGGGUUUGGGUaug-CAGG- -5'
2910 5' -52.7 NC_001493.1 + 86066 0.72 0.787077
Target:  5'- aCCCugGACCUCCucGACaCGUACGaCCa -3'
miRNA:   3'- -GGGugUUGGGGGu-UUGgGUAUGCaGG- -5'
2910 5' -52.7 NC_001493.1 + 102393 0.73 0.762421
Target:  5'- gCCCGCGccggucgaaggaaccGCCCCCGuACCCGUGgagauaccaauCGUCg -3'
miRNA:   3'- -GGGUGU---------------UGGGGGUuUGGGUAU-----------GCAGg -5'
2910 5' -52.7 NC_001493.1 + 113288 0.77 0.4942
Target:  5'- aCCCgGCAACCCCCu--CCCA-AgGUCCa -3'
miRNA:   3'- -GGG-UGUUGGGGGuuuGGGUaUgCAGG- -5'
2910 5' -52.7 NC_001493.1 + 69364 0.77 0.53382
Target:  5'- gCCAU-ACCCCUcggAGACUCAUACGUCUa -3'
miRNA:   3'- gGGUGuUGGGGG---UUUGGGUAUGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 25432 0.76 0.57451
Target:  5'- aCCCACGGuggacCCCCCGAACCUcc-UGUCCc -3'
miRNA:   3'- -GGGUGUU-----GGGGGUUUGGGuauGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 13384 0.74 0.667785
Target:  5'- aCCGCucCCCCCuuGCCCcguGUGCGgCCg -3'
miRNA:   3'- gGGUGuuGGGGGuuUGGG---UAUGCaGG- -5'
2910 5' -52.7 NC_001493.1 + 128938 0.74 0.667785
Target:  5'- aCCGCucCCCCCuuGCCCcguGUGCGgCCg -3'
miRNA:   3'- gGGUGuuGGGGGuuUGGG---UAUGCaGG- -5'
2910 5' -52.7 NC_001493.1 + 30891 0.74 0.698646
Target:  5'- cCCCACAucGCCCCCAuGCCaccggucacggCGUGgacCGUCCc -3'
miRNA:   3'- -GGGUGU--UGGGGGUuUGG-----------GUAU---GCAGG- -5'
2910 5' -52.7 NC_001493.1 + 50801 0.73 0.718947
Target:  5'- aCCCGgcACCCCCAccaaccgcGACCCAcAUGUCa -3'
miRNA:   3'- -GGGUguUGGGGGU--------UUGGGUaUGCAGg -5'
2910 5' -52.7 NC_001493.1 + 44314 0.73 0.758551
Target:  5'- gCCCGagcaGGCCCCgGAACCgCu--CGUCCg -3'
miRNA:   3'- -GGGUg---UUGGGGgUUUGG-GuauGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.