miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2910 5' -52.7 NC_001493.1 + 36839 1.15 0.002676
Target:  5'- aCCCACAACCCCCAAACCCAUACGUCCu -3'
miRNA:   3'- -GGGUGUUGGGGGUUUGGGUAUGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 105568 0.8 0.384665
Target:  5'- aUCACGGCCCCCAGGaggguUCCAU-CGUCCg -3'
miRNA:   3'- gGGUGUUGGGGGUUU-----GGGUAuGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 15155 0.79 0.437471
Target:  5'- aCCCGCGgccucgaucgcACCCCCGAGCUCGacgagguCGUCCa -3'
miRNA:   3'- -GGGUGU-----------UGGGGGUUUGGGUau-----GCAGG- -5'
2910 5' -52.7 NC_001493.1 + 130709 0.79 0.437471
Target:  5'- aCCCGCGgccucgaucgcACCCCCGAGCUCGacgagguCGUCCa -3'
miRNA:   3'- -GGGUGU-----------UGGGGGUUUGGGUau-----GCAGG- -5'
2910 5' -52.7 NC_001493.1 + 113288 0.77 0.4942
Target:  5'- aCCCgGCAACCCCCu--CCCA-AgGUCCa -3'
miRNA:   3'- -GGG-UGUUGGGGGuuuGGGUaUgCAGG- -5'
2910 5' -52.7 NC_001493.1 + 18214 0.77 0.53382
Target:  5'- aCCCA-GGCCCCCGAccGCCCGgGCGUgCCc -3'
miRNA:   3'- -GGGUgUUGGGGGUU--UGGGUaUGCA-GG- -5'
2910 5' -52.7 NC_001493.1 + 133768 0.77 0.53382
Target:  5'- aCCCA-GGCCCCCGAccGCCCGgGCGUgCCc -3'
miRNA:   3'- -GGGUgUUGGGGGUU--UGGGUaUGCA-GG- -5'
2910 5' -52.7 NC_001493.1 + 69364 0.77 0.53382
Target:  5'- gCCAU-ACCCCUcggAGACUCAUACGUCUa -3'
miRNA:   3'- gGGUGuUGGGGG---UUUGGGUAUGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 100471 0.76 0.564258
Target:  5'- aCCGCGACaaCCCCGGggccGCCCGUGC-UCCa -3'
miRNA:   3'- gGGUGUUG--GGGGUU----UGGGUAUGcAGG- -5'
2910 5' -52.7 NC_001493.1 + 25432 0.76 0.57451
Target:  5'- aCCCACGGuggacCCCCCGAACCUcc-UGUCCc -3'
miRNA:   3'- -GGGUGUU-----GGGGGUUUGGGuauGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 36338 0.75 0.62626
Target:  5'- gCCACAGCCcguuCCCGAACCCcu-CGcUCCa -3'
miRNA:   3'- gGGUGUUGG----GGGUUUGGGuauGC-AGG- -5'
2910 5' -52.7 NC_001493.1 + 128938 0.74 0.667785
Target:  5'- aCCGCucCCCCCuuGCCCcguGUGCGgCCg -3'
miRNA:   3'- gGGUGuuGGGGGuuUGGG---UAUGCaGG- -5'
2910 5' -52.7 NC_001493.1 + 13384 0.74 0.667785
Target:  5'- aCCGCucCCCCCuuGCCCcguGUGCGgCCg -3'
miRNA:   3'- gGGUGuuGGGGGuuUGGG---UAUGCaGG- -5'
2910 5' -52.7 NC_001493.1 + 96154 0.74 0.692507
Target:  5'- gCCCGCGACCgCCAGACaaucggcgggagugaCC--ACGUCCa -3'
miRNA:   3'- -GGGUGUUGGgGGUUUG---------------GGuaUGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 30891 0.74 0.698646
Target:  5'- cCCCACAucGCCCCCAuGCCaccggucacggCGUGgacCGUCCc -3'
miRNA:   3'- -GGGUGU--UGGGGGUuUGG-----------GUAU---GCAGG- -5'
2910 5' -52.7 NC_001493.1 + 93919 0.74 0.70883
Target:  5'- cCCCGCAAaaCCCAuuccuCCUGUGCGUCa -3'
miRNA:   3'- -GGGUGUUggGGGUuu---GGGUAUGCAGg -5'
2910 5' -52.7 NC_001493.1 + 130517 0.73 0.717938
Target:  5'- cUCCACGugccaGCCCCCGuuggGACCCAUcagccagaacccgGCgGUCCg -3'
miRNA:   3'- -GGGUGU-----UGGGGGU----UUGGGUA-------------UG-CAGG- -5'
2910 5' -52.7 NC_001493.1 + 14963 0.73 0.717938
Target:  5'- cUCCACGugccaGCCCCCGuuggGACCCAUcagccagaacccgGCgGUCCg -3'
miRNA:   3'- -GGGUGU-----UGGGGGU----UUGGGUA-------------UG-CAGG- -5'
2910 5' -52.7 NC_001493.1 + 50801 0.73 0.718947
Target:  5'- aCCCGgcACCCCCAccaaccgcGACCCAcAUGUCa -3'
miRNA:   3'- -GGGUguUGGGGGU--------UUGGGUaUGCAGg -5'
2910 5' -52.7 NC_001493.1 + 58230 0.73 0.728987
Target:  5'- gCUCACAugCCCgAuGCCgAUACGaUCCg -3'
miRNA:   3'- -GGGUGUugGGGgUuUGGgUAUGC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.