miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2910 5' -52.7 NC_001493.1 + 3177 0.67 0.967041
Target:  5'- cCCCGCGGCCguCCCAuccaccauCCCGUugagcACGaCCa -3'
miRNA:   3'- -GGGUGUUGG--GGGUuu------GGGUA-----UGCaGG- -5'
2910 5' -52.7 NC_001493.1 + 3618 0.68 0.939193
Target:  5'- aCCCGCcGCCCCCGcgaauACCgGUucgcacaggggcGCGcUCCu -3'
miRNA:   3'- -GGGUGuUGGGGGUu----UGGgUA------------UGC-AGG- -5'
2910 5' -52.7 NC_001493.1 + 4473 0.68 0.93118
Target:  5'- gUCACGACCCCgGAagGCUCAUgguguuacgacauacGCGUCa -3'
miRNA:   3'- gGGUGUUGGGGgUU--UGGGUA---------------UGCAGg -5'
2910 5' -52.7 NC_001493.1 + 5141 0.67 0.956506
Target:  5'- aCCCGcCAGCCCCCcggucaccGGGgCCGaGCGUgCa -3'
miRNA:   3'- -GGGU-GUUGGGGG--------UUUgGGUaUGCAgG- -5'
2910 5' -52.7 NC_001493.1 + 5476 0.73 0.758551
Target:  5'- gCCCACGgguGCCCCC--GCC---ACGUCCu -3'
miRNA:   3'- -GGGUGU---UGGGGGuuUGGguaUGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 7471 0.66 0.972973
Target:  5'- -aCACGAgCCCCAucACCCGUucgGUUCg -3'
miRNA:   3'- ggGUGUUgGGGGUu-UGGGUAug-CAGG- -5'
2910 5' -52.7 NC_001493.1 + 8176 0.68 0.934259
Target:  5'- gCCUcCGACCCCCcGGCCCGaaccGCGcUUCa -3'
miRNA:   3'- -GGGuGUUGGGGGuUUGGGUa---UGC-AGG- -5'
2910 5' -52.7 NC_001493.1 + 9052 0.71 0.831627
Target:  5'- aCCACGuugaCCCCGGACCCcgccacGCGcUCCa -3'
miRNA:   3'- gGGUGUug--GGGGUUUGGGua----UGC-AGG- -5'
2910 5' -52.7 NC_001493.1 + 9261 0.7 0.853807
Target:  5'- cCCCGCGGCUCCCGuugaccgcgcaaaaGACCCGggucGCGcUCa -3'
miRNA:   3'- -GGGUGUUGGGGGU--------------UUGGGUa---UGC-AGg -5'
2910 5' -52.7 NC_001493.1 + 9774 0.66 0.982456
Target:  5'- aCgACGACCCCgGAgucACCCGc-CGUCa -3'
miRNA:   3'- gGgUGUUGGGGgUU---UGGGUauGCAGg -5'
2910 5' -52.7 NC_001493.1 + 11198 0.66 0.982456
Target:  5'- gCCACGGCCgUCAAAucCCCGUGCu--- -3'
miRNA:   3'- gGGUGUUGGgGGUUU--GGGUAUGcagg -5'
2910 5' -52.7 NC_001493.1 + 11247 0.67 0.966078
Target:  5'- uCCCACGGgUCgUCGAGCCCucggucugggugugaGCGUCCg -3'
miRNA:   3'- -GGGUGUUgGG-GGUUUGGGua-------------UGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 11275 0.66 0.97563
Target:  5'- -gCGCGACCgCCGGACCgCGUACacauguauauguGUCUg -3'
miRNA:   3'- ggGUGUUGGgGGUUUGG-GUAUG------------CAGG- -5'
2910 5' -52.7 NC_001493.1 + 12144 0.67 0.967041
Target:  5'- gCUCACAACCCCUguccguaucGAACCCcgcgcgaGUCg -3'
miRNA:   3'- -GGGUGUUGGGGG---------UUUGGGuaug---CAGg -5'
2910 5' -52.7 NC_001493.1 + 12564 0.69 0.905896
Target:  5'- cCUCACAACCCCgu-AUCgAUACGcuUCCa -3'
miRNA:   3'- -GGGUGUUGGGGguuUGGgUAUGC--AGG- -5'
2910 5' -52.7 NC_001493.1 + 12687 0.68 0.929078
Target:  5'- gCCC-CGACCCCgGacgcGACCCGggaGUCUc -3'
miRNA:   3'- -GGGuGUUGGGGgU----UUGGGUaugCAGG- -5'
2910 5' -52.7 NC_001493.1 + 12749 0.68 0.934259
Target:  5'- cUCCACcgaGACCCCCAcuCCCGaACcuUCCc -3'
miRNA:   3'- -GGGUG---UUGGGGGUuuGGGUaUGc-AGG- -5'
2910 5' -52.7 NC_001493.1 + 13217 0.68 0.929078
Target:  5'- gCCACGAUCaCCCAgagggcGACCCcgGCGaacaCCa -3'
miRNA:   3'- gGGUGUUGG-GGGU------UUGGGuaUGCa---GG- -5'
2910 5' -52.7 NC_001493.1 + 13384 0.74 0.667785
Target:  5'- aCCGCucCCCCCuuGCCCcguGUGCGgCCg -3'
miRNA:   3'- gGGUGuuGGGGGuuUGGG---UAUGCaGG- -5'
2910 5' -52.7 NC_001493.1 + 13985 0.67 0.960244
Target:  5'- cCCCGCucauucACCCCCcuGGACCaCAcACG-CCu -3'
miRNA:   3'- -GGGUGu-----UGGGGG--UUUGG-GUaUGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.